These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGACAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCAGGTAGGTGATATTAGTCTCAATAAAAATGCAAAAACATTTCCATTGTCACAAAGTGGAAGACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGGATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTTTGGATCTACCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACATTCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGCGACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTTCTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCCTGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG] [+] EMBL CA332140 [ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGACAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCAGGTAGGTGATATTAGTCTCAATAAAAATGCAAAAACATTTCCATTGTCACAAAGTGGAAGACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGGATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTTTGGATCTACCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACATTCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGCGACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTTCTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCCTGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG] consensusID : consensus_468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGAAATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAGCGCCTTTAACGGGTTCTCCTTCGTGGCCACCGAGGACAGCTTCCTGTGAGGCGGGAACGCTCTGACGCGAGCTCTTCCTGCAGTGCCGGAGACTTTCTCTATACGACCTCTACTGAACTCTGCTCCCCGTTGAAGATGAGACACTACATGGATGACTTTATTACATCACACGTAGTTTTTTTGTTTTAGTGCGCACATTTGGTGATTCAGTCCAGGAACGGTTGTGAACAGGCTGGACGGGACACGCAGACACGTATGACGCAAGTGAAATCATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG] [+] EMBL FR0056756 [AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGAAATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAGCGCCTTTAACGGGTTCTCCTTCGTGGCCACCGAGGACAGCTTCCTGTGAGGCGGGAACGCTCTGACGCGAGCTCTTCCTGCAGTGCCGGAGACTTTCTCTATACGACCTCTACTGAACTCTGCTCCCCGTTGAAGATGAGACACTACATGGATGACTTTATTACATCACACGTAGTTTTTTTGTTTTAGTGCGCACATTTGGTGATTCAGTCCAGGAACGGTTGTGAACAGGCTGGACGGGACACGCAGACACGTATGACGCAAGTGAAATCATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_468#0 ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGA 60 consensus_468#1 ------------------------------------------------------------ consensus_468#0 CAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCA 120 consensus_468#1 ------------------------AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGA 36 * ** **** ** * * *** * * consensus_468#0 GGTAGGTGATATTAGTCTCAATAAAAATGCAAAAA-CATTTCCATTGTCACAAAGTGGAA 179 consensus_468#1 AATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAG 96 * *** * * * * * * * ** * ** *** * ** * * consensus_468#0 GACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGG 239 consensus_468#1 CGCCTTTAACGGGT-------TCTCCTTC-GTGGCCACCGAGGACAGCTTC-CTGTGAGG 147 ** * * **** *** **** **** * ** * * *** ** consensus_468#0 ATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTT---TGGATCTA 296 consensus_468#1 CGGGAACGCT--CTGACG-CGAGC-TCTTCCTGCAGTGCCGGAGACTTTCTCTATACGAC 203 * * * ****** ** * * ***** ** * *** ** * * consensus_468#0 CCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACAT 356 consensus_468#1 CTCTACTGAACTCTGCTCCCCGTTGAAG-ATGAGACACTACATGGATGACTTTATTACAT 262 * ** *** * *** ** * ** ** *** ** * * **** consensus_468#0 TCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGC 416 consensus_468#1 C---ACACGTAGTTTTTTTGTTTTAGTGC-GCACATTTGGTGATTCAGTCCAGGAACGGT 318 * * ** * * ** * *** * *** * * * * ** consensus_468#0 GACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTT 476 consensus_468#1 TGTGAA----CAGGCTGGACGGGACACGCAGA-CACGTATGACGCAAGTGAAA-----TC 368 *** * * * * ** ** ** * * **** * *** * consensus_468#0 CTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCC 536 consensus_468#1 ATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG------------------ 410 * * * * ** ** * * * * * ** consensus_468#0 TGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG 586 consensus_468#1 -------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |