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Takifugu rubripes
cluster # 468 cluster # 468       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_468#0 length = 586 sequences # 1  
consensus_468#1 length = 410 sequences # 1  

consensusID : consensus_468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGACAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCAGGTAGGTGATATTAGTCTCAATAAAAATGCAAAAACATTTCCATTGTCACAAAGTGGAAGACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGGATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTTTGGATCTACCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACATTCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGCGACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTTCTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCCTGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG]

[+] EMBL CA332140             [ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGACAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCAGGTAGGTGATATTAGTCTCAATAAAAATGCAAAAACATTTCCATTGTCACAAAGTGGAAGACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGGATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTTTGGATCTACCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACATTCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGCGACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTTCTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCCTGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG]


>consensus_468#0 ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGA CAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCA GGTAGGTGATATTAGTCTCAATAAAAATGCAAAAACATTTCCATTGTCACAAAGTGGAAG ACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGGA TGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTTTGGATCTACCAC ACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACATTCTA AAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGCGACG AAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTTCTTT TTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCCTGCT GATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG



consensusID : consensus_468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence
                              [AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGAAATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAGCGCCTTTAACGGGTTCTCCTTCGTGGCCACCGAGGACAGCTTCCTGTGAGGCGGGAACGCTCTGACGCGAGCTCTTCCTGCAGTGCCGGAGACTTTCTCTATACGACCTCTACTGAACTCTGCTCCCCGTTGAAGATGAGACACTACATGGATGACTTTATTACATCACACGTAGTTTTTTTGTTTTAGTGCGCACATTTGGTGATTCAGTCCAGGAACGGTTGTGAACAGGCTGGACGGGACACGCAGACACGTATGACGCAAGTGAAATCATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG]

[+] EMBL FR0056756            [AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGAAATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAGCGCCTTTAACGGGTTCTCCTTCGTGGCCACCGAGGACAGCTTCCTGTGAGGCGGGAACGCTCTGACGCGAGCTCTTCCTGCAGTGCCGGAGACTTTCTCTATACGACCTCTACTGAACTCTGCTCCCCGTTGAAGATGAGACACTACATGGATGACTTTATTACATCACACGTAGTTTTTTTGTTTTAGTGCGCACATTTGGTGATTCAGTCCAGGAACGGTTGTGAACAGGCTGGACGGGACACGCAGACACGTATGACGCAAGTGAAATCATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG]


>consensus_468#1 AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGAAATGGGTTCAGGTTCTGTGAGTCG GACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAGCGCCTTTAACGGGTTCTCCTTCGT GGCCACCGAGGACAGCTTCCTGTGAGGCGGGAACGCTCTGACGCGAGCTCTTCCTGCAGT GCCGGAGACTTTCTCTATACGACCTCTACTGAACTCTGCTCCCCGTTGAAGATGAGACAC TACATGGATGACTTTATTACATCACACGTAGTTTTTTTGTTTTAGTGCGCACATTTGGTG ATTCAGTCCAGGAACGGTTGTGAACAGGCTGGACGGGACACGCAGACACGTATGACGCAA GTGAAATCATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_468#0      ATGAAGTTTTAATAGATAAAGCACATCTGTAGCACATCTGCAGCAAAGGGAATCAACAGA 60
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      CAGGGTGTCCCCACTGTGATGGCGCATCATCATTACATGAATGAATCGGCGACCTGTGCA 120
consensus_468#1      ------------------------AAAACCCAGCACATTGATCCAGAGTTCACCAGGAGA 36
                                              *    **  ****  **  *  *   *** *   *

consensus_468#0      GGTAGGTGATATTAGTCTCAATAAAAATGCAAAAA-CATTTCCATTGTCACAAAGTGGAA 179
consensus_468#1      AATGGGTTCAGGTTCTGTGAGTCGGACTCCAGAGTTCACCGCCAGCGCCAGCGCCAGCAG 96
                       * ***     *  * * * *   * * ** *   **   ***  * **      * * 

consensus_468#0      GACCAATTATGGGTCAATTCTTCTTCTTCTGTGGATCCAAGTGAGGGTCACGCTGCAGGG 239
consensus_468#1      CGCCTTTAACGGGT-------TCTCCTTC-GTGGCCACCGAGGACAGCTTC-CTGTGAGG 147
                       **  * * ****       *** **** ****   *    **  *   * ***   **

consensus_468#0      ATGTCATTTTTGCTGACGGCGCTCATTTTCCTTATGTTTTGTGGACCTT---TGGATCTA 296
consensus_468#1      CGGGAACGCT--CTGACG-CGAGC-TCTTCCTGCAGTGCCGGAGACTTTCTCTATACGAC 203
                       *  *   *  ****** **  * * *****   **   *  *** **   *  *    

consensus_468#0      CCACACAAGGGTCTTTTGGCCGATGTGGCATCAGCTTCTAAGTGAAATCACTAGCAACAT 356
consensus_468#1      CTCTACTGAACTCTGCTCCCCGTTGAAG-ATGAGACACTACATGGATGACTTTATTACAT 262
                     *   **     ***  *  *** **  * ** **   ***  ** *     *    ****

consensus_468#0      TCTAAAATATAAAAGACAGAAATCACTGTTGGTCATCCAACCAATCATTTCTTGGAAGGC 416
consensus_468#1      C---ACACGTAGTTTTTTTGTTTTAGTGC-GCACATTTGGTGATTCAGTCCAGGAACGGT 318
                         * *  **           * * **  *  ***      * *** * *  * * ** 

consensus_468#0      GACGAAACTGTACATTCTATGTACAACACAATTCATAAAGGCAGCAAATAAAAGTTTTTT 476
consensus_468#1      TGTGAA----CAGGCTGGACGGGACACGCAGA-CACGTATGACGCAAGTGAAA-----TC 368
                        ***     *   *  * *    ** **   **   * *  **** * ***     * 

consensus_468#0      CTTTTTTTTTTGAATGGTTCGGTTTTGAGGAATTAGCCTTAGCTGGAGTTGACCTCGTCC 536
consensus_468#1      ATGGAGATCTCCAGTGTATCAGCAGGACGAGGTCAACTCCAG------------------ 410
                      *     * *  * **  ** *      *   * * *   **                  

consensus_468#0      TGCTGATACACAGGAGATCACCATGATTTCACTTGCTTCATACGTGTCTG 586
consensus_468#1      --------------------------------------------------
                                                                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)