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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[TTTGAAAGCTTTATTTATCCAGGTGAGTTAAATAAAAACAAATTCTTACTTACAAGGGAGACCTGTGGGTCAACAGAATGTTGGTGATTTTTAAAAAGAATAACTTGATTAACGAGATTATTGCAAATTTAGACATTTTCGTTCATGTACAATCCTTCTGTGGAACCTTGTGGTTTTGTGTGAAATCAATTGTTTTAGATCTTTCCATGTTTCAAGTTACAACCTTGTTTTTTTTTTGCAGGACCAAAGTGAAGGATGGAGAGATGAAGGCCTGCCTCAGATGGCTCGCAAACTTCCATGCTCTCTTCCTGGGAGTAGTGCCAGAAAATCTGTGGCCTGTTGGGACCTACTGGCACCTGGAGACTCGGCCGGACGAGTTGGAGGCCATGGATCATCCCAAACTCAAAGCGGCTGCTGGAGAGATTGACAGGATTCTAAG]
[+] EMBL CA332232 [TTTGAAAGCTTTATTTATCCAGGTGAGTTAAATAAAAACAAATTCTTACTTACAAGGGAGACCTGTGGGTCAACAGAATGTTGGTGATTTTTAAAAAGAATAACTTGATTAACGAGATTATTGCAAATTTAGACATTTTCGTTCATGTACAATCCTTCTGTGGAACCTTGTGGTTTTGTGTGAAATCAATTGTTTTAGATCTTTCCATGTTTCAAGTTACAACCTTGTTTTTTTTTTGCAGGACCAAAGTGAAGGATGGAGAGATGAAGGCCTGCCTCAGATGGCTCGCAAACTTCCATGCTCTCTTCCTGGGAGTAGTGCCAGAAAATCTGTGGCCTGTTGGGACCTACTGGCACCTGGAGACTCGGCCGGACGAGTTGGAGGCCATGGATCATCCCAAACTCAAAGCGGCTGCTGGAGAGATTGACAGGATTCTAAG]
consensusID : consensus_482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[GTACCAGGATATTGTCCTGCAGGCGTGCAGAGCTTGAGTGGCTGCATGTGGGTGCAAAGATCCAAACTCTGTGGAGCGGGTACGGAGAGATAGTCCGGCTCCACCTGGAGGGTGGTGAGCGGCCCTCCGTCATTGTCAAACATGTCAAGTTTCCAGCCGAAGCTGAACATCCAGGCGGCAGGAACACAAACCATTCACACCTGCGTAAAGTGAGGTCATACCAGGTGGAGACATACTGGTACCAGAACTATTTCACTAATCAGGGTTGGCGGATCCCTGCCTGCCTGGCTGCCTATTCCCACGGAGACGAGATGCTGATGGNGTTAGAGGATCTGGATGCAGCCGGTTATAGTCAGAGAAGGACCAAAGTGAAGGATGGAGAGATGAAGGCCTGCCTCAGATGGCTCGCAAAACTT]
[+] EMBL FR0063581 [GTACCAGGATATTGTCCTGCAGGCGTGCAGAGCTTGAGTGGCTGCATGTGGGTGCAAAGATCCAAACTCTGTGGAGCGGGTACGGAGAGATAGTCCGGCTCCACCTGGAGGGTGGTGAGCGGCCCTCCGTCATTGTCAAACATGTCAAGTTTCCAGCCGAAGCTGAACATCCAGGCGGCAGGAACACAAACCATTCACACCTGCGTAAAGTGAGGTCATACCAGGTGGAGACATACTGGTACCAGAACTATTTCACTAATCAGGGTTGGCGGATCCCTGCCTGCCTGGCTGCCTATTCCCACGGAGACGAGATGCTGATGGNGTTAGAGGATCTGGATGCAGCCGGTTATAGTCAGAGAAGGACCAAAGTGAAGGATGGAGAGATGAAGGCCTGCCTCAGATGGCTCGCAAAACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_482#0 -TTTGAAAGCTTTATTTATCCAGGTGAGTTAAATAAAAACAAATTCTTACTTACAAGGGA 59
consensus_482#1 GTACCAGGATATTGTCC-TGCAGGCGTGCAGAGCTTGAGTGGCTGCATGTGGGTGCAA-A 58
* * ** * * **** * * * * * * * *
consensus_482#0 GACCTGTGGGTCAACAGAATGTTGGTGATTTTTAAAAAGAATAACTTGATTAACGAGATT 119
consensus_482#1 GATCCA-AACTCTGTGGAGCG--GGT-ACGGAGAGATAGTCCGGCTCCACCTGGAGGGTG 114
** * ** ** * *** * * * ** ** * * *
consensus_482#0 ATTGCAAAT--TTAGACATTTTCGTTCATGTACAATCCTTCTGTGGAACCTTGTGGTTTT 177
consensus_482#1 GTGAGCGGCCCTCCGTCATTGTCAAACATGT-CAAGTTTCCAGCCGAAGCTGAACATCCA 173
* * * **** ** ***** *** * * * *** ** *
consensus_482#0 G----TGTGAAATCAATTGTTTTAGATCTTTCCATGTTTCAAGTTACAACCTT----GTT 229
consensus_482#1 GGCGGCAGGAACACAAACCATTCACACCTGCGTAAAGTG-AGGTCATACCAGGTGGAGAC 232
* *** *** ** * * ** * * * ** * * * *
consensus_482#0 TTTTTTTTGCAGGACCAAAGTGAAGGATGGAGA--GATGAAGGCCTGCCTCAGATGGCTC 287
consensus_482#1 ATACTGGTACCAGAACTATTTCACTAATCAGGGTTGGCGGATCCCTGCCT-GCCTGGCT- 290
* * * * ** * * * * ** * * * * ******* *****
consensus_482#0 GCAAACTTCCATGCTCTCTTCCTGGGAGTAGTGCCAGAAAATCTGTGGCCTGTTGGGACC 347
consensus_482#1 GCCTATTCCCACGGAGACGAGATGCTGATGGNGTTAGAGGATCTGGATGCAGCCGG---T 347
** * * *** * * ** * * * *** ***** * * **
consensus_482#0 TACTGGCACCTGGAGACTCGGCCGGACGAGTTGGAGGCCATGGATCATCCCAAACTCAAA 407
consensus_482#1 TATAGTCAGAGAAGGACCAAAGTGAAGGATGGAGAGATGAAGGCCTGCCTCAGATGGCTC 407
** * ** *** * * ** *** * ** * ** *
consensus_482#0 GCGGCTGCTGGAGAGATTGACAGGATTCTAAG 439
consensus_482#1 GCAAAACTT----------------------- 416
** *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |