Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 490 cluster # 490       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_490#0 length = 424 sequences # 1  
consensus_490#1 length = 417 sequences # 1  

consensusID : consensus_490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [AACTGGGGGCTCGTCACTGCAAACTCATGCCGGTAAAGAATCCCCCTCGAAGGTGTGGAAACCCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGTTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGTTACCATGAAGATTTTACAAGATGGTTTTAAAATCGGATCATTGGCAACATCTGGCGCCACCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTTTTATTATCTGCTGATGAATTGTTCTTTGGATTAAAGCAATAATGATGAAAAAAAAAAAAAAAAA]

[+] EMBL FR0056151            [AACTGGGGGCTCGTCACTGCAAACTCATGCCGGTAAAGAATCCCCCTCGAAGGTGTGGAAACCCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGTTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGTTACCATGAAGATTTTACAAGATGGTTTTAAAATCGGATCATTGGCAACATCTGGCGCCACCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTTTTATTATCTGCTGATGAATTGTTCTTTGGATTAAAGCAATAATGATGAAAAAAAAAAAAAAAAA]


>consensus_490#0 AACTGGGGGCTCGTCACTGCAAACTCATGCCGGTAAAGAATCCCCCTCGAAGGTGTGGAA ACCCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGT TTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGT TACCATGAAGATTTTACAAGATGGTTTTAAAATCGGATCATTGGCAACATCTGGCGCCAC CGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTA CAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTT TTATTATCTGCTGATGAATTGTTCTTTGGATTAAAGCAATAATGATGAAAAAAAAAAAAA AAAA



consensusID : consensus_490#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence
                              [AAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGTAAACAATCTTTTTCGCCCCTTTGGGGGGGCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGTTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGTTACCATGAAGATTTTACAACATGGTTTTAAAATCGGCTCATTGGCAACATCTGGCGCCACCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTTTTACTATCTGCTGATGAATTGTTCTTTGGATTAGAGCAATAATGATGAAGACACTC]

[+] EMBL FR0056156            [AAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGTAAACAATCTTTTTCGCCCCTTTGGGGGGGCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGTTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGTTACCATGAAGATTTTACAACATGGTTTTAAAATCGGCTCATTGGCAACATCTGGCGCCACCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTTTTACTATCTGCTGATGAATTGTTCTTTGGATTAGAGCAATAATGATGAAGACACTC]


>consensus_490#1 AAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGTAAACAATCTTTTTCGCCCCTTTGGG GGGGCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAG TTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATG TTACCATGAAGATTTTACAACATGGTTTTAAAATCGGCTCATTGGCAACATCTGGCGCCA CCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATT ACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTT TTTACTATCTGCTGATGAATTGTTCTTTGGATTAGAGCAATAATGATGAAGACACTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_490#0      -AACTGGGGGCTCGTCACTGCAAACTCATGCCGGTAAAGAATCCCCCTCGAAGGTGTGGA 59
consensus_490#1      AAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGTAAACAATCTTTTTCGCCCCTTTGGG 60
                      **             *   *        *** ***** ****    ***    * *** 

consensus_490#0      AACCCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAG 119
consensus_490#1      GGGGCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAG 120
                         ********************************************************

consensus_490#0      TTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATG 179
consensus_490#1      TTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATG 180
                     ************************************************************

consensus_490#0      TTACCATGAAGATTTTACAAGATGGTTTTAAAATCGGATCATTGGCAACATCTGGCGCCA 239
consensus_490#1      TTACCATGAAGATTTTACAACATGGTTTTAAAATCGGCTCATTGGCAACATCTGGCGCCA 240
                     ******************** **************** **********************

consensus_490#0      CCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATT 299
consensus_490#1      CCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATT 300
                     ************************************************************

consensus_490#0      ACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTT 359
consensus_490#1      ACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTT 360
                     ************************************************************

consensus_490#0      TTTATTATCTGCTGATGAATTGTTCTTTGGATTAAAGCAATAATGATGAAAAAAAAAAAA 419
consensus_490#1      TTTACTATCTGCTGATGAATTGTTCTTTGGATTAGAGCAATAATGATGAAGACACTC--- 417
                     **** ***************************** *************** * *      

consensus_490#0      AAAAA 424
consensus_490#1      -----
                          




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)