These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [AACTGGGGGCTCGTCACTGCAAACTCATGCCGGTAAAGAATCCCCCTCGAAGGTGTGGAAACCCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGTTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGTTACCATGAAGATTTTACAAGATGGTTTTAAAATCGGATCATTGGCAACATCTGGCGCCACCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTTTTATTATCTGCTGATGAATTGTTCTTTGGATTAAAGCAATAATGATGAAAAAAAAAAAAAAAAA] [+] EMBL FR0056151 [AACTGGGGGCTCGTCACTGCAAACTCATGCCGGTAAAGAATCCCCCTCGAAGGTGTGGAAACCCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGTTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGTTACCATGAAGATTTTACAAGATGGTTTTAAAATCGGATCATTGGCAACATCTGGCGCCACCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTTTTATTATCTGCTGATGAATTGTTCTTTGGATTAAAGCAATAATGATGAAAAAAAAAAAAAAAAA] consensusID : consensus_490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [AAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGTAAACAATCTTTTTCGCCCCTTTGGGGGGGCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGTTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGTTACCATGAAGATTTTACAACATGGTTTTAAAATCGGCTCATTGGCAACATCTGGCGCCACCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTTTTACTATCTGCTGATGAATTGTTCTTTGGATTAGAGCAATAATGATGAAGACACTC] [+] EMBL FR0056156 [AAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGTAAACAATCTTTTTCGCCCCTTTGGGGGGGCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAGTTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATGTTACCATGAAGATTTTACAACATGGTTTTAAAATCGGCTCATTGGCAACATCTGGCGCCACCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATTACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTTTTTACTATCTGCTGATGAATTGTTCTTTGGATTAGAGCAATAATGATGAAGACACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_490#0 -AACTGGGGGCTCGTCACTGCAAACTCATGCCGGTAAAGAATCCCCCTCGAAGGTGTGGA 59 consensus_490#1 AAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGTAAACAATCTTTTTCGCCCCTTTGGG 60 ** * * *** ***** **** *** * *** consensus_490#0 AACCCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAG 119 consensus_490#1 GGGGCCCGTCAGGCCTGTTCTCTTACATCCCCTGTGACGTCAGATGACTCCGCCTTAGAG 120 ******************************************************** consensus_490#0 TTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATG 179 consensus_490#1 TTTGGGCTCCAACAGGGAGCCTGGAGATGTGATACCATTGAATCCCTTTGACTGAACATG 180 ************************************************************ consensus_490#0 TTACCATGAAGATTTTACAAGATGGTTTTAAAATCGGATCATTGGCAACATCTGGCGCCA 239 consensus_490#1 TTACCATGAAGATTTTACAACATGGTTTTAAAATCGGCTCATTGGCAACATCTGGCGCCA 240 ******************** **************** ********************** consensus_490#0 CCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATT 299 consensus_490#1 CCGTTAACGGACTAAAATAGAAAAAGGAACCCCAAGTGCCATTTAAACTGAGCCCAAATT 300 ************************************************************ consensus_490#0 ACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTT 359 consensus_490#1 ACAATTTTGTACTGAGACTTCAACTTTATCAGCCAACCAGCAGTTGATTTATCTTTCTTT 360 ************************************************************ consensus_490#0 TTTATTATCTGCTGATGAATTGTTCTTTGGATTAAAGCAATAATGATGAAAAAAAAAAAA 419 consensus_490#1 TTTACTATCTGCTGATGAATTGTTCTTTGGATTAGAGCAATAATGATGAAGACACTC--- 417 **** ***************************** *************** * * consensus_490#0 AAAAA 424 consensus_490#1 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |