These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_50#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [ATCGATCCATCACTGTGTCCTCCCTGCAGATCAACCCCAAAGACCTGGACTCCAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGTGGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCCTTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCATACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCACCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGGTGGGCGAGATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGACATGATCCGTCTGCAGCTGAAACTGCAGGGCAGCATCAGCGTCCAGGTGAACGCCGGGCCGCTCGCATATGCCCGAGCCTTTCTGGATGATGCAAGCACCAAGAAGTATCCCGATAACAAAGTGAAGCAGCTGAAGGAGGTCTTCAGGCATTTTGTGGAGGCGTGTGGCCACGGCTTAGGCATCAATGAGCGGCTCATCAAAGAAGACCAGCANGAGTATCACGACGAGATGAAG] [+] EMBL CA590742 [ATCGATCCATCACTGTGTCCTCCCTGCAGATCAACCCCAAAGACCTGGACTCCAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGTGGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCCTTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCATACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCACCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGGTGGGCGAGATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGACATGATCCGTCTGCAGCTGAAACTGCAGGGCAGCATCAGCGTCCAGGTGAACGCCGGGCCGCTCGCATATGCCCGAGCCTTTCTGGATGATGCAAGCACCAAGAAGTATCCCGATAACAAAGTGAAGCAGCTGAAGGAGGTCTTCAGGCATTTTGTGGAGGCGTGTGGCCACGGCTTAGGCATCAATGAGCGGCTCATCAAAGAAGACCAGCANGAGTATCACGACGAGATGAAG] consensusID : consensus_50#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [ATTCACCCCTCTGTCTGAGATATCTCAGAGGCTCCTCAAGCTTTACTCGGAGAAGTTTGGACAGGAGAATGTGAAGATGATCCAGGACTCTGGAAGGATCAACCCCAAAGACCTGGACTCCAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGTGGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCCTTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCATACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCACCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGATGGGCGAGATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGAC] [+] EMBL BU808436 [ATTCACCCCTCTGTCTGAGATATCTCAGAGGCTCCTCAAGCTTTACTCGGAGAAGTTTGGACAGGAGAATGTGAAGATGATCCAGGACTCTGGAAGGATCAACCCCAAAGACCTGGACTCCAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGTGGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCCTTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCATACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCACCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGATGGGCGAGATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_50#0 ------------------------------------------------------------ consensus_50#1 ATTCACCCCTCTGTCTGAGATATCTCAGAGGCTCCTCAAGCTTTACTCGGAGAAGTTTGG 60 consensus_50#0 --------ATCGATCCATCACTGTGTCCTCCCTGCAGATCAACCCCAAAGACCTGGACTC 52 consensus_50#1 ACAGGAGAATGTGAAGATGATCCAGGACTCTGGAAGGATCAACCCCAAAGACCTGGACTC 120 ** ** * * *** ************************ consensus_50#0 CAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGT 112 consensus_50#1 CAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGT 180 ************************************************************ consensus_50#0 GGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCC 172 consensus_50#1 GGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCC 240 ************************************************************ consensus_50#0 TTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCAT 232 consensus_50#1 TTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCAT 300 ************************************************************ consensus_50#0 ACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCA 292 consensus_50#1 ACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCA 360 ************************************************************ consensus_50#0 CCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGGTGGGCGA 352 consensus_50#1 CCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGATGGGCGA 420 **************************************************** ******* consensus_50#0 GATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGACATGATCCGTCTGCAGCTGAAACTGCA 412 consensus_50#1 GATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGAC-------------------------- 454 ********************************** consensus_50#0 GGGCAGCATCAGCGTCCAGGTGAACGCCGGGCCGCTCGCATATGCCCGAGCCTTTCTGGA 472 consensus_50#1 ------------------------------------------------------------ consensus_50#0 TGATGCAAGCACCAAGAAGTATCCCGATAACAAAGTGAAGCAGCTGAAGGAGGTCTTCAG 532 consensus_50#1 ------------------------------------------------------------ consensus_50#0 GCATTTTGTGGAGGCGTGTGGCCACGGCTTAGGCATCAATGAGCGGCTCATCAAAGAAGA 592 consensus_50#1 ------------------------------------------------------------ consensus_50#0 CCAGCANGAGTATCACGACGAGATGAAG 620 consensus_50#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |