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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_50#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[ATCGATCCATCACTGTGTCCTCCCTGCAGATCAACCCCAAAGACCTGGACTCCAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGTGGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCCTTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCATACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCACCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGGTGGGCGAGATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGACATGATCCGTCTGCAGCTGAAACTGCAGGGCAGCATCAGCGTCCAGGTGAACGCCGGGCCGCTCGCATATGCCCGAGCCTTTCTGGATGATGCAAGCACCAAGAAGTATCCCGATAACAAAGTGAAGCAGCTGAAGGAGGTCTTCAGGCATTTTGTGGAGGCGTGTGGCCACGGCTTAGGCATCAATGAGCGGCTCATCAAAGAAGACCAGCANGAGTATCACGACGAGATGAAG]
[+] EMBL CA590742 [ATCGATCCATCACTGTGTCCTCCCTGCAGATCAACCCCAAAGACCTGGACTCCAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGTGGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCCTTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCATACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCACCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGGTGGGCGAGATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGACATGATCCGTCTGCAGCTGAAACTGCAGGGCAGCATCAGCGTCCAGGTGAACGCCGGGCCGCTCGCATATGCCCGAGCCTTTCTGGATGATGCAAGCACCAAGAAGTATCCCGATAACAAAGTGAAGCAGCTGAAGGAGGTCTTCAGGCATTTTGTGGAGGCGTGTGGCCACGGCTTAGGCATCAATGAGCGGCTCATCAAAGAAGACCAGCANGAGTATCACGACGAGATGAAG]
consensusID : consensus_50#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[ATTCACCCCTCTGTCTGAGATATCTCAGAGGCTCCTCAAGCTTTACTCGGAGAAGTTTGGACAGGAGAATGTGAAGATGATCCAGGACTCTGGAAGGATCAACCCCAAAGACCTGGACTCCAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGTGGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCCTTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCATACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCACCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGATGGGCGAGATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGAC]
[+] EMBL BU808436 [ATTCACCCCTCTGTCTGAGATATCTCAGAGGCTCCTCAAGCTTTACTCGGAGAAGTTTGGACAGGAGAATGTGAAGATGATCCAGGACTCTGGAAGGATCAACCCCAAAGACCTGGACTCCAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGTGGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCCTTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCATACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCACCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGATGGGCGAGATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_50#0 ------------------------------------------------------------
consensus_50#1 ATTCACCCCTCTGTCTGAGATATCTCAGAGGCTCCTCAAGCTTTACTCGGAGAAGTTTGG 60
consensus_50#0 --------ATCGATCCATCACTGTGTCCTCCCTGCAGATCAACCCCAAAGACCTGGACTC 52
consensus_50#1 ACAGGAGAATGTGAAGATGATCCAGGACTCTGGAAGGATCAACCCCAAAGACCTGGACTC 120
** ** * * *** ************************
consensus_50#0 CAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGT 112
consensus_50#1 CAAGTATGCTTATATCCAAGTAACACATGTGACTCCATATCTGGATGAGAAGGAGTTCGT 180
************************************************************
consensus_50#0 GGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCC 172
consensus_50#1 GGACAGGAAGACAGATTTCGAGAAGTGCCACAACATCCGTCGCTTTGTGTTTGAAATGCC 240
************************************************************
consensus_50#0 TTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCAT 232
consensus_50#1 TTTCACCATATCGGGCAAGAAGCAAGGCGGAGTGGAGGAGCAGTGCAAACGCAGGACCAT 300
************************************************************
consensus_50#0 ACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCA 292
consensus_50#1 ACTGACCACTACTCATTGTTTCCCCTACGTGAAGAAACGCATCGCAGTCATGTATCAGCA 360
************************************************************
consensus_50#0 CCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGGTGGGCGA 352
consensus_50#1 CCACACCGACCTGAGCCCCATCGAAGTGGCCATCGACGAAATGAGCAAGAAGATGGGCGA 420
**************************************************** *******
consensus_50#0 GATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGACATGATCCGTCTGCAGCTGAAACTGCA 412
consensus_50#1 GATCAAGCAGCTTTGCTCCTCCAGCGAGGTGGAC-------------------------- 454
**********************************
consensus_50#0 GGGCAGCATCAGCGTCCAGGTGAACGCCGGGCCGCTCGCATATGCCCGAGCCTTTCTGGA 472
consensus_50#1 ------------------------------------------------------------
consensus_50#0 TGATGCAAGCACCAAGAAGTATCCCGATAACAAAGTGAAGCAGCTGAAGGAGGTCTTCAG 532
consensus_50#1 ------------------------------------------------------------
consensus_50#0 GCATTTTGTGGAGGCGTGTGGCCACGGCTTAGGCATCAATGAGCGGCTCATCAAAGAAGA 592
consensus_50#1 ------------------------------------------------------------
consensus_50#0 CCAGCANGAGTATCACGACGAGATGAAG 620
consensus_50#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |