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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[TCTGGGCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATATTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTTCCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAGAGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAACAGCAGCCAAACTGGGTCTTTTGCAGACATGTCTCTGTCGGAGTTAGACAACAGTTTCCTGTGTTATCCGCTGGAGGAGACCCTGGCAGCAGAGGTTGCACAGCACATAACTCTGAGTCTTCAGGAGGCCTCCTCCAGCCTGGGCTGCACCAAGCTCATCTTATCCGATCTTCTGCTCCGCAACATCAGCCAAGAGCTGCTCCATCTGGCCTCCAATGAGCCCTGTGGTCTCAGGGGGGCGCTGATCGACCTCTGTGTGGACAGGGTGGACCTGGGCTGCCTCTATGCTGTGGACCAAATAGCAGTGGACCCCACGCTGGTCCCAACTTTTCAGGTGACCCTGGTACTGAGGCTAGATGCC]
[+] EMBL CA333670 [TCTGGGCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATATTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTTCCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAGAGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAACAGCAGCCAAACTGGGTCTTTTGCAGACATGTCTCTGTCGGAGTTAGACAACAGTTTCCTGTGTTATCCGCTGGAGGAGACCCTGGCAGCAGAGGTTGCACAGCACATAACTCTGAGTCTTCAGGAGGCCTCCTCCAGCCTGGGCTGCACCAAGCTCATCTTATCCGATCTTCTGCTCCGCAACATCAGCCAAGAGCTGCTCCATCTGGCCTCCAATGAGCCCTGTGGTCTCAGGGGGGCGCTGATCGACCTCTGTGTGGACAGGGTGGACCTGGGCTGCCTCTATGCTGTGGACCAAATAGCAGTGGACCCCACGCTGGTCCCAACTTTTCAGGTGACCCTGGTACTGAGGCTAGATGCC]
consensusID : consensus_503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[GTTCCATAACTTTATTAAATGTAGATGAAAATATTCACGGCTGGAAGGGGGAGGCAGTCGTCAGTGAGGAGGGGGGGCGACCTTTCCACCATCAAAGAATCCCAAAAGTTGCCAGGCAGGATAGTACGCTGAGAACGTGCGCTAAAGTCTCATTGGCTGATAATTCCAGTGGGCGGGGCCTCCCGACTCGGGTATTTAATGCTTTGTTCCATTGTTTCCAGTGTTTTCCAGCTGGTCTGGGCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATATTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTTCCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAGAGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAACAGCAGCCAAACTGGTGAGTCTTTATTCGACTAAAACTACACTTCAATAC]
[+] EMBL CA332475 [GTTCCATAACTTTATTAAATGTAGATGAAAATATTCACGGCTGGAAGGGGGAGGCAGTCGTCAGTGAGGAGGGGGGGCGACCTTTCCACCATCAAAGAATCCCAAAAGTTGCCAGGCAGGATAGTACGCTGAGAACGTGCGCTAAAGTCTCATTGGCTGATAATTCCAGTGGGCGGGGCCTCCCGACTCGGGTATTTAATGCTTTGTTCCATTGTTTCCAGTGTTTTCCAGCTGGTCTGGGCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATATTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTTCCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAGAGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAACAGCAGCCAAACTGGTGAGTCTTTATTCGACTAAAACTACACTTCAATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_503#0 ------------------------------------------------------------
consensus_503#1 GTTCCATAACTTTATTAAATGTAGATGAAAATATTCACGGCTGGAAGGGGGAGGCAGTCG 60
consensus_503#0 ------------------------------------------------------------
consensus_503#1 TCAGTGAGGAGGGGGGGCGACCTTTCCACCATCAAAGAATCCCAAAAGTTGCCAGGCAGG 120
consensus_503#0 ------------------------------------------------------------
consensus_503#1 ATAGTACGCTGAGAACGTGCGCTAAAGTCTCATTGGCTGATAATTCCAGTGGGCGGGGCC 180
consensus_503#0 -------------------------------------------------------TCTGG 5
consensus_503#1 TCCCGACTCGGGTATTTAATGCTTTGTTCCATTGTTTCCAGTGTTTTCCAGCTGGTCTGG 240
*****
consensus_503#0 GCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATA 65
consensus_503#1 GCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATA 300
************************************************************
consensus_503#0 TTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTT 125
consensus_503#1 TTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTT 360
************************************************************
consensus_503#0 CCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAG 185
consensus_503#1 CCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAG 420
************************************************************
consensus_503#0 AGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAAC 245
consensus_503#1 AGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAAC 480
************************************************************
consensus_503#0 AGCAGCCAAACTGGGTCTTTTGCAGACATGTCTCTGTCGGAGTTAGACAACAGTTTCCTG 305
consensus_503#1 AGCAGCCAAACTGG------------TGAGTCTTTATTCGACTAAAACTACACTTCAATA 528
************** **** * * ** * * ** *** ** *
consensus_503#0 TGTTATCCGCTGGAGGAGACCCTGGCAGCAGAGGTTGCACAGCACATAACTCTGAGTCTT 365
consensus_503#1 C----------------------------------------------------------- 529
consensus_503#0 CAGGAGGCCTCCTCCAGCCTGGGCTGCACCAAGCTCATCTTATCCGATCTTCTGCTCCGC 425
consensus_503#1 ------------------------------------------------------------
consensus_503#0 AACATCAGCCAAGAGCTGCTCCATCTGGCCTCCAATGAGCCCTGTGGTCTCAGGGGGGCG 485
consensus_503#1 ------------------------------------------------------------
consensus_503#0 CTGATCGACCTCTGTGTGGACAGGGTGGACCTGGGCTGCCTCTATGCTGTGGACCAAATA 545
consensus_503#1 ------------------------------------------------------------
consensus_503#0 GCAGTGGACCCCACGCTGGTCCCAACTTTTCAGGTGACCCTGGTACTGAGGCTAGATGCC 605
consensus_503#1 ------------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |