These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAAAGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATGTCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTATGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATTAAAATTGTCAGAGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAATGTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGGTCCTTAAAAACATGAAC] [+] EMBL CA332623 [ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAAAGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATGTCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTATGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATTAAAATTGTCAGAGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAATGTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGGTCCTTAAAAACATGAAC] consensusID : consensus_514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 91 fasta sequence [CAGTCATAAATCAAGGTCAAGCGTTCTATTTTGTTTAATAAATATTAAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT] [+] EMBL CA588571 [CAGTCATAAATCAAGGTCAAGCGTTCTATTTTGTTTAATAAATATTAAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_514#0 ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAA 60 consensus_514#1 ------------------------------------------------------------ consensus_514#0 AGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATG 120 consensus_514#1 ------------------------------------------------------------ consensus_514#0 TCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTA 180 consensus_514#1 ------------------------------------------------------------ consensus_514#0 TGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATT 240 consensus_514#1 -------------CAGTCATAAATCAAGGTCAAGC-GTTCTATTTTGTTTAATAAATATT 46 * * ***** * ** * * * * * * ***** consensus_514#0 AAAATTGTCAG-AGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAAT 299 consensus_514#1 AAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT--------------- 91 *** ** *** * * *** ** * * *** * ** consensus_514#0 GTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGG 359 consensus_514#1 ------------------------------------------------------------ consensus_514#0 TCCTTAAAAACATGAAC 376 consensus_514#1 ----------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |