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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 514 cluster # 514       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_514#0 length = 376 sequences # 1  
consensus_514#1 length = 91 sequences # 1  

consensusID : consensus_514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence
                              [ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAAAGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATGTCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTATGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATTAAAATTGTCAGAGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAATGTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGGTCCTTAAAAACATGAAC]

[+] EMBL CA332623             [ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAAAGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATGTCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTATGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATTAAAATTGTCAGAGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAATGTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGGTCCTTAAAAACATGAAC]


>consensus_514#0 ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAA AGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATG TCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTA TGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATT AAAATTGTCAGAGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAATG TGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGGT CCTTAAAAACATGAAC



consensusID : consensus_514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence
                              [CAGTCATAAATCAAGGTCAAGCGTTCTATTTTGTTTAATAAATATTAAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT]

[+] EMBL CA588571             [CAGTCATAAATCAAGGTCAAGCGTTCTATTTTGTTTAATAAATATTAAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT]


>consensus_514#1 CAGTCATAAATCAAGGTCAAGCGTTCTATTTTGTTTAATAAATATTAAAGTTTGCAGTAA CTGTAAGGTCAAACTTCTATTTCAAACGGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_514#0      ACGCTTGACCTTGATTTATGACTGGAAGCACAGGCAGATTTTTTAAAAAAAAGAAAAAAA 60
consensus_514#1      ------------------------------------------------------------
                                                                                 

consensus_514#0      AGTGAGGAGGCGGACTACATGTCTCATGATTAGACAGACATATCCTGGGTGCAAAAAATG 120
consensus_514#1      ------------------------------------------------------------
                                                                                 

consensus_514#0      TCTCCCAGTAATCTGAGACTAACTGCACTGAAATAACTTTCGGCATTCCCAACAGTTTTA 180
consensus_514#1      ------------------------------------------------------------
                                                                                 

consensus_514#0      TGAGACCACCTGTTAATAATAAAAGGGTGGCAGACAGGTGAACGGCCTCCACCTGATATT 240
consensus_514#1      -------------CAGTCATAAATCAAGGTCAAGC-GTTCTATTTTGTTTAATAAATATT 46
                                   * * *****     * **  * * *  *     *  *    *****

consensus_514#0      AAAATTGTCAG-AGCAGTATAATCGTGCAGACACTTCCAGGTTGTGAAGGGCTTTAAAAT 299
consensus_514#1      AAAGTTTGCAGTAACTGTAAGGTCAAACTTCTATTTCAAACGGGT--------------- 91
                     *** **  *** * * ***   **   *    * *** *    **               

consensus_514#0      GTGTCAATTTCATGTACCATGATTCAAAATTTTTAAACGCATTTGAATGCTACACATGGG 359
consensus_514#1      ------------------------------------------------------------
                                                                                 

consensus_514#0      TCCTTAAAAACATGAAC 376
consensus_514#1      -----------------
                                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)