These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_53#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [CTAAAATGTCCGCTTTCACCAACAAGTTTAGCGCTTACACGATGAGTCAACTCAACGAGATCCTAGAGGATGACGAGAAACTTACGAAGATGGTGTTGGACATGGAGGAGATGCAGGAAGTCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCATCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGCAGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATGGTGGGAATCAACCTCAGTAAAGAAGGAAGGTCCATGTTGTCTGGAAACCTTCAGACTGACTTTGGCCGAGAGGATCCCAGTCACAGAGGGAGATAAACCACACATTCAGGTTGACTGTTGTCATTATTGGGCTGATCATAAACTCAAATGTCTACAAGAAAAAAGG] [+] EMBL FR0059270 [CTAAAATGTCCGCTTTCACCAACAAGTTTAGCGCTTACACGATGAGTCAACTCAACGAGATCCTAGAGGATGACGAGAAACTTACGAAGATGGTGTTGGACATGGAGGAGATGCAGGAAGTCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCATCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGCAGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATGGTGGGAATCAACCTCAGTAAAGAAGGAAGGTCCATGTTGTCTGGAAACCTTCAGACTGACTTTGGCCGAGAGGATCCCAGTCACAGAGGGAGATAAACCACACATTCAGGTTGACTGTTGTCATTATTGGGCTGATCATAAACTCAAATGTCTACAAGAAAAAAGG] consensusID : consensus_53#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [GTTTAGCGGGAGGCGATGACTCAACTCAACGAGACCCTAGAGGATGACGAGAAACTTACGAAGACGGTGTTGGACATGGAGGAGATGCAGGAAGTCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCATCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGCAGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATCACAAGACAGGAAGCACATCTCTGGACACACTGCTGGCCTTGCTGCAGGCTGAGGGAGCTAAAATAGAGGAAGAGACAGAGAACATGGCCGACTCCTTCCTGGATGGGGAGATGACCCTGGA] [+] EMBL FR0059469 [GTTTAGCGGGAGGCGATGACTCAACTCAACGAGACCCTAGAGGATGACGAGAAACTTACGAAGACGGTGTTGGACATGGAGGAGATGCAGGAAGTCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCATCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGCAGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATCACAAGACAGGAAGCACATCTCTGGACACACTGCTGGCCTTGCTGCAGGCTGAGGGAGCTAAAATAGAGGAAGAGACAGAGAACATGGCCGACTCCTTCCTGGATGGGGAGATGACCCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_53#0 CTAAAATGTCCGCTTTCACCAACAAGTTTAGCGCTTACACGATGAGTCAACTCAACGAGA 60 consensus_53#1 -------------------------GTTTAGCGGG-AGGCGATGACTCAACTCAACGAGA 34 ******** * ****** ************** consensus_53#0 TCCTAGAGGATGACGAGAAACTTACGAAGATGGTGTTGGACATGGAGGAGATGCAGGAAG 120 consensus_53#1 CCCTAGAGGATGACGAGAAACTTACGAAGACGGTGTTGGACATGGAGGAGATGCAGGAAG 94 ***************************** ***************************** consensus_53#0 TCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCA 180 consensus_53#1 TCCAGCAGAGCAAAGAAAAGACCCTGGCCAACAACAGAACCTTGGCAGAGCAGAACCTCA 154 ************************************************************ consensus_53#0 TCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGC 240 consensus_53#1 TCCTGCAGCCCAACCTGGAACATAAAAAAGAGCAGCTCACCAAGACCTACCGATTTCTGC 214 ************************************************************ consensus_53#0 AGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATGGTGGGAATCAACCTC 300 consensus_53#1 AGGAGAACTTTGAGTCCTATCAGCTCCGAAAATCTACTTTAGATCAC------------- 261 ******************************************** consensus_53#0 AGTAAAGAAGGAAGGTCCATGTTGTCTGGAAACCTTCAGACTGACTTTGGCCGAGAGGAT 360 consensus_53#1 ----AAGACAGGAAGCACATCTC-TGGACACACTGCTGGCCTTGCTGCAGGCTGAGGGAG 316 **** * * * *** * * * ** * ** ** * * *** consensus_53#0 CCCAGTCACAGAGGGAGATAAACCACACATTCAGGTTGACTGTTGTCATTATTGGGCTGA 420 consensus_53#1 CTAAAATAGAGGAAGAGACAGAGAACATGGCCGACT---CCTTCCTGGATGGGGAGATGA 373 * * * ** **** * * *** * * * * * * * * *** consensus_53#0 TCATAAACTCAAATGTCTACAAGAAAAAAGG 451 consensus_53#1 CCCTGGA------------------------ 380 * * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |