These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [TGACCTCATTTTGATCCATCTATTTTCTATGCTATTATAGGTATCTAAGGCATTTTGTATATCAGTTATATAGTATAGCATTTAAAATATGTAGGTTAGTAATGTTTGAATTTAAAATTTCATGTGAACTACATTCTTTATCATTTTTACATAATTGTGGCAAGAGTTGCCTATAAATTGATGGTGTTGTGTGATACTTTTGTACACTGCGATACTGGACATCATGAGGATGCACCCTGTTGAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATGTATGTTCTGCGACAAGTTACATCTGCTCGTGTGGGACTGAGTTTTCGGAATACCAAGACATGCATGAACACAGCACAACACATGAACCGGGGCACCAAGTCCTTGATCATGAAACGATAAAGAAGCGCAGGCTGGAGAAA] [+] EMBL CA332902 [TGACCTCATTTTGATCCATCTATTTTCTATGCTATTATAGGTATCTAAGGCATTTTGTATATCAGTTATATAGTATAGCATTTAAAATATGTAGGTTAGTAATGTTTGAATTTAAAATTTCATGTGAACTACATTCTTTATCATTTTTACATAATTGTGGCAAGAGTTGCCTATAAATTGATGGTGTTGTGTGATACTTTTGTACACTGCGATACTGGACATCATGAGGATGCACCCTGTTGAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATGTATGTTCTGCGACAAGTTACATCTGCTCGTGTGGGACTGAGTTTTCGGAATACCAAGACATGCATGAACACAGCACAACACATGAACCGGGGCACCAAGTCCTTGATCATGAAACGATAAAGAAGCGCAGGCTGGAGAAA] consensusID : consensus_544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [AGAGGTGTGTTATAGACTAAGACTGGNCTCTATCGGCACTTTTGTTTTACCAATGAAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATGTATGTTCTGCGACAAGTTACATCT] [+] EMBL FR0060876 [AGAGGTGTGTTATAGACTAAGACTGGNCTCTATCGGCACTTTTGTTTTACCAATGAAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCATGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGCTTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGGAGCATGTATGTTCTGCGACAAGTTACATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_544#0 TGACCTCATTTTGATCCATCTATTTTCTATGCTATTATAGGTATCTAAGGCATTTTGTAT 60 consensus_544#1 ------------------------------------------------------------ consensus_544#0 ATCAGTTATATAGTATAGCATTTAAAATATGTAGGTTAGTAATGTTTGAATTTAAAATTT 120 consensus_544#1 ------------------------------------------------------------ consensus_544#0 CATGTGAACTACATTCTTTATCATTTTTACATAATTGTGGCAAGAGTTGCCTATAAATTG 180 consensus_544#1 ------------------------------------------------------------ consensus_544#0 ATGGTGTTGTGTGATACTTTTGTACACTGCGATACTGGACATCATGAGGATGCACCCTGT 240 consensus_544#1 --AGAGGTGTGTTATAGACTAAGACTGGNCTCTATCGGCACTTTTG----TTTTACCAAT 54 * * ***** *** * ** * ** ** * ** * ** * consensus_544#0 TGAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCA 300 consensus_544#1 GAAAGGATAGTTATTGATCCGAGTTCAACATCATTGGCCAGGACGAGCCCAGCCTGATCA 114 ********************************************************** consensus_544#0 TGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGC 360 consensus_544#1 TGGAAAGAGGGAGGCAGAAACTAGAAGTCCTGGACAGAGGATTCAGCCGGGAGTTGATGC 174 ************************************************************ consensus_544#0 TTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGG 420 consensus_544#1 TTGCTGGCCGTATATGCTTCAGCTGTGAGCAGATTTTTGCAGATCGGAAGTGCCTGGAGG 234 ************************************************************ consensus_544#0 AGCATGTATGTTCTGCGACAAGTTACATCTGCTCGTGTGGGACTGAGTTTTCGGAATACC 480 consensus_544#1 AGCATGTATGTTCTGCGACAAGTTACATCT------------------------------ 264 ****************************** consensus_544#0 AAGACATGCATGAACACAGCACAACACATGAACCGGGGCACCAAGTCCTTGATCATGAAA 540 consensus_544#1 ------------------------------------------------------------ consensus_544#0 CGATAAAGAAGCGCAGGCTGGAGAAA 566 consensus_544#1 -------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |