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Takifugu rubripes
cluster # 557 cluster # 557       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_557#0 length = 569 sequences # 1  
 consensus_557#1 length = 487 sequences # 1  
consensusID : consensus_557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence 
                              [TCTTTGGTGGAGCCTTGCGGGACCGGTGGCCCCGCAGCGTCACTGGCTGCGTTCCGCATCTGTCAAAGACAAAGGTCTCGCCGCAACGATCGATTGGGCACGCCAGCAGTCTGACAAGCGGACGCGACGCACGACACGGTCGGGACTCAGTGAGTCTGCGCCAAGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTTGCAGCGGGTAAAAATAATAACAGCGAAACACGTCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGGAATGCAGCAAACTCCGACGGCCAATAAAACGGAATCGAATAACTGAGGGTATTTACGGCAGTACCTTCCTGTACCTGAAGTTCCTGGTAGTGTGGGCACTGGTGCTACTGGCAAACTTTGTACTGGAATTCAGGTTTGAATACCTCTGGCCATTCTGGCTCTTCCTCCGGAGTGCGTATGACTCCTTCAAATACCAGGGGTTGGACTTT]

[+] EMBL CA333221             [TCTTTGGTGGAGCCTTGCGGGACCGGTGGCCCCGCAGCGTCACTGGCTGCGTTCCGCATCTGTCAAAGACAAAGGTCTCGCCGCAACGATCGATTGGGCACGCCAGCAGTCTGACAAGCGGACGCGACGCACGACACGGTCGGGACTCAGTGAGTCTGCGCCAAGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTTGCAGCGGGTAAAAATAATAACAGCGAAACACGTCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGGAATGCAGCAAACTCCGACGGCCAATAAAACGGAATCGAATAACTGAGGGTATTTACGGCAGTACCTTCCTGTACCTGAAGTTCCTGGTAGTGTGGGCACTGGTGCTACTGGCAAACTTTGTACTGGAATTCAGGTTTGAATACCTCTGGCCATTCTGGCTCTTCCTCCGGAGTGCGTATGACTCCTTCAAATACCAGGGGTTGGACTTT]




>consensus_557#0
TCTTTGGTGGAGCCTTGCGGGACCGGTGGCCCCGCAGCGTCACTGGCTGCGTTCCGCATC
TGTCAAAGACAAAGGTCTCGCCGCAACGATCGATTGGGCACGCCAGCAGTCTGACAAGCG
GACGCGACGCACGACACGGTCGGGACTCAGTGAGTCTGCGCCAAGAGCAAAAGAGGAGGT
TCCCGAATAGAGTCCTTTATTTATTTCTTTGTTTGCAGCGGGTAAAAATAATAACAGCGA
AACACGTCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAG
ATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGG
AATGCAGCAAACTCCGACGGCCAATAAAACGGAATCGAATAACTGAGGGTATTTACGGCA
GTACCTTCCTGTACCTGAAGTTCCTGGTAGTGTGGGCACTGGTGCTACTGGCAAACTTTG
TACTGGAATTCAGGTTTGAATACCTCTGGCCATTCTGGCTCTTCCTCCGGAGTGCGTATG
ACTCCTTCAAATACCAGGGGTTGGACTTT

consensusID : consensus_557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence 
                              [AGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTCGCAGCGGGTAAAAATAATAACAGCGAAACACGCCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGGAATGCAGCAAACTCCTCCTCCAAAAATTACAAAAACGCCAGCAGCAACTCCTCGACGCTAAACTCCTCCCCCCGCGGCCACAGCGCCACCAACGGCAGCGTGCCCACGGCCGCGCCGTCGTCCTCCTCTTCCACGGGGAGGAACGAGAAGAAGAAGCTGGCGGCGGGAAAGGGGACGTCAGGGGGGTCCCACAAAGGCCCCACCGACAACTGCATCCCCAACAACCAGCTGAGTAAGCCAGAAGCACTTGTGAGATTGGAGCAGGACGTGAAGAAGTTAAAGGCCGACCT]

[+] EMBL CA333068             [AGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTCGCAGCGGGTAAAAATAATAACAGCGAAACACGCCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGGAATGCAGCAAACTCCTCCTCCAAAAATTACAAAAACGCCAGCAGCAACTCCTCGACGCTAAACTCCTCCCCCCGCGGCCACAGCGCCACCAACGGCAGCGTGCCCACGGCCGCGCCGTCGTCCTCCTCTTCCACGGGGAGGAACGAGAAGAAGAAGCTGGCGGCGGGAAAGGGGACGTCAGGGGGGTCCCACAAAGGCCCCACCGACAACTGCATCCCCAACAACCAGCTGAGTAAGCCAGAAGCACTTGTGAGATTGGAGCAGGACGTGAAGAAGTTAAAGGCCGACCT]




>consensus_557#1
AGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTCGCAGCGGGT
AAAAATAATAACAGCGAAACACGCCACAGACACTTCATTTATTGCATTTGTCCTCATACA
CTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGAT
GAAGCGGCGCAATGCGGAATGCAGCAAACTCCTCCTCCAAAAATTACAAAAACGCCAGCA
GCAACTCCTCGACGCTAAACTCCTCCCCCCGCGGCCACAGCGCCACCAACGGCAGCGTGC
CCACGGCCGCGCCGTCGTCCTCCTCTTCCACGGGGAGGAACGAGAAGAAGAAGCTGGCGG
CGGGAAAGGGGACGTCAGGGGGGTCCCACAAAGGCCCCACCGACAACTGCATCCCCAACA
ACCAGCTGAGTAAGCCAGAAGCACTTGTGAGATTGGAGCAGGACGTGAAGAAGTTAAAGG
CCGACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_557#0      TCTTTGGTGGAGCCTTGCGGGACCGGTGGCCCCGCAGCGTCACTGGCTGCGTTCCGCATC 60
consensus_557#1      ------------------------------------------------------------
                                                                                 

consensus_557#0      TGTCAAAGACAAAGGTCTCGCCGCAACGATCGATTGGGCACGCCAGCAGTCTGACAAGCG 120
consensus_557#1      ------------------------------------------------------------
                                                                                 

consensus_557#0      GACGCGACGCACGACACGGTCGGGACTCAGTGAGTCTGCGCCAAGAGCAAAAGAGGAGGT 180
consensus_557#1      -------------------------------------------AGAGCAAAAGAGGAGGT 17
                                                                *****************

consensus_557#0      TCCCGAATAGAGTCCTTTATTTATTTCTTTGTTTGCAGCGGGTAAAAATAATAACAGCGA 240
consensus_557#1      TCCCGAATAGAGTCCTTTATTTATTTCTTTGTTCGCAGCGGGTAAAAATAATAACAGCGA 77
                     ********************************* **************************

consensus_557#0      AACACGTCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAG 300
consensus_557#1      AACACGCCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAG 137
                     ****** *****************************************************

consensus_557#0      ATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGG 360
consensus_557#1      ATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGG 197
                     ************************************************************

consensus_557#0      AATGCAGCAAACTCCGACGGCCAATAAAACGGAATCGAATAACTGAGGGTATTTACGGCA 420
consensus_557#1      AATGCAGCAAACTCCTCCTCCAAAAATTACAAAAACGC-CAGCAGCAACTCCTCGACGCT 256
                     ***************  *  * ** *  **  ** **   * * *    *  *    ** 

consensus_557#0      GTAC----CTTCCTGTACCTGAAGTTCC-----TGGTAGTGTGGGCACTG--GTGCTACT 469
consensus_557#1      AAACTCCTCCCCCCGCGGCCACAGCGCCACCAACGGCAGCGTGCCCACGGCCGCGCCGTC 316
                       **    *  ** *   *   **  **      ** ** ***  *** *  * **    

consensus_557#0      GGCAAACT-TTGTACTGGAATTCAGGTTTGAATACCTCTGGCCATTCT----GGCTCTTC 524
consensus_557#1      GTCCTCCTCTTCCACGGGGAGGAACGAGAAGAAGAAGCTGGCGGCGGGAAAGGGGACGTC 376
                     * *   ** **  ** ** *   * *     *     *****          **  * **

consensus_557#0      CTCCGGAGTGCGTAT-GACTCCTTCAAATACCAGGGGTTGGACTTT-------------- 569
consensus_557#1      AGGGGGGTCCCACAAAGGCCCCACCGACAACTGCATCCCCAACAACCAGCTGAGTAAGCC 436
                         **    *  *  * * **  * *  **          **                 

consensus_557#0      ---------------------------------------------------
consensus_557#1      AGAAGCACTTGTGAGATTGGAGCAGGACGTGAAGAAGTTAAAGGCCGACCT 487


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)