These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [TCTTTGGTGGAGCCTTGCGGGACCGGTGGCCCCGCAGCGTCACTGGCTGCGTTCCGCATCTGTCAAAGACAAAGGTCTCGCCGCAACGATCGATTGGGCACGCCAGCAGTCTGACAAGCGGACGCGACGCACGACACGGTCGGGACTCAGTGAGTCTGCGCCAAGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTTGCAGCGGGTAAAAATAATAACAGCGAAACACGTCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGGAATGCAGCAAACTCCGACGGCCAATAAAACGGAATCGAATAACTGAGGGTATTTACGGCAGTACCTTCCTGTACCTGAAGTTCCTGGTAGTGTGGGCACTGGTGCTACTGGCAAACTTTGTACTGGAATTCAGGTTTGAATACCTCTGGCCATTCTGGCTCTTCCTCCGGAGTGCGTATGACTCCTTCAAATACCAGGGGTTGGACTTT] [+] EMBL CA333221 [TCTTTGGTGGAGCCTTGCGGGACCGGTGGCCCCGCAGCGTCACTGGCTGCGTTCCGCATCTGTCAAAGACAAAGGTCTCGCCGCAACGATCGATTGGGCACGCCAGCAGTCTGACAAGCGGACGCGACGCACGACACGGTCGGGACTCAGTGAGTCTGCGCCAAGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTTGCAGCGGGTAAAAATAATAACAGCGAAACACGTCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGGAATGCAGCAAACTCCGACGGCCAATAAAACGGAATCGAATAACTGAGGGTATTTACGGCAGTACCTTCCTGTACCTGAAGTTCCTGGTAGTGTGGGCACTGGTGCTACTGGCAAACTTTGTACTGGAATTCAGGTTTGAATACCTCTGGCCATTCTGGCTCTTCCTCCGGAGTGCGTATGACTCCTTCAAATACCAGGGGTTGGACTTT] consensusID : consensus_557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [AGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTCGCAGCGGGTAAAAATAATAACAGCGAAACACGCCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGGAATGCAGCAAACTCCTCCTCCAAAAATTACAAAAACGCCAGCAGCAACTCCTCGACGCTAAACTCCTCCCCCCGCGGCCACAGCGCCACCAACGGCAGCGTGCCCACGGCCGCGCCGTCGTCCTCCTCTTCCACGGGGAGGAACGAGAAGAAGAAGCTGGCGGCGGGAAAGGGGACGTCAGGGGGGTCCCACAAAGGCCCCACCGACAACTGCATCCCCAACAACCAGCTGAGTAAGCCAGAAGCACTTGTGAGATTGGAGCAGGACGTGAAGAAGTTAAAGGCCGACCT] [+] EMBL CA333068 [AGAGCAAAAGAGGAGGTTCCCGAATAGAGTCCTTTATTTATTTCTTTGTTCGCAGCGGGTAAAAATAATAACAGCGAAACACGCCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAGATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGGAATGCAGCAAACTCCTCCTCCAAAAATTACAAAAACGCCAGCAGCAACTCCTCGACGCTAAACTCCTCCCCCCGCGGCCACAGCGCCACCAACGGCAGCGTGCCCACGGCCGCGCCGTCGTCCTCCTCTTCCACGGGGAGGAACGAGAAGAAGAAGCTGGCGGCGGGAAAGGGGACGTCAGGGGGGTCCCACAAAGGCCCCACCGACAACTGCATCCCCAACAACCAGCTGAGTAAGCCAGAAGCACTTGTGAGATTGGAGCAGGACGTGAAGAAGTTAAAGGCCGACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_557#0 TCTTTGGTGGAGCCTTGCGGGACCGGTGGCCCCGCAGCGTCACTGGCTGCGTTCCGCATC 60 consensus_557#1 ------------------------------------------------------------ consensus_557#0 TGTCAAAGACAAAGGTCTCGCCGCAACGATCGATTGGGCACGCCAGCAGTCTGACAAGCG 120 consensus_557#1 ------------------------------------------------------------ consensus_557#0 GACGCGACGCACGACACGGTCGGGACTCAGTGAGTCTGCGCCAAGAGCAAAAGAGGAGGT 180 consensus_557#1 -------------------------------------------AGAGCAAAAGAGGAGGT 17 ***************** consensus_557#0 TCCCGAATAGAGTCCTTTATTTATTTCTTTGTTTGCAGCGGGTAAAAATAATAACAGCGA 240 consensus_557#1 TCCCGAATAGAGTCCTTTATTTATTTCTTTGTTCGCAGCGGGTAAAAATAATAACAGCGA 77 ********************************* ************************** consensus_557#0 AACACGTCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAG 300 consensus_557#1 AACACGCCACAGACACTTCATTTATTGCATTTGTCCTCATACACTATAAAACTGGATAAG 137 ****** ***************************************************** consensus_557#0 ATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGG 360 consensus_557#1 ATTACAGTCGTTACTCGAAGGCCAAAGCCAAGGGGAGGAGGATGAAGCGGCGCAATGCGG 197 ************************************************************ consensus_557#0 AATGCAGCAAACTCCGACGGCCAATAAAACGGAATCGAATAACTGAGGGTATTTACGGCA 420 consensus_557#1 AATGCAGCAAACTCCTCCTCCAAAAATTACAAAAACGC-CAGCAGCAACTCCTCGACGCT 256 *************** * * ** * ** ** ** * * * * * ** consensus_557#0 GTAC----CTTCCTGTACCTGAAGTTCC-----TGGTAGTGTGGGCACTG--GTGCTACT 469 consensus_557#1 AAACTCCTCCCCCCGCGGCCACAGCGCCACCAACGGCAGCGTGCCCACGGCCGCGCCGTC 316 ** * ** * * ** ** ** ** *** *** * * ** consensus_557#0 GGCAAACT-TTGTACTGGAATTCAGGTTTGAATACCTCTGGCCATTCT----GGCTCTTC 524 consensus_557#1 GTCCTCCTCTTCCACGGGGAGGAACGAGAAGAAGAAGCTGGCGGCGGGAAAGGGGACGTC 376 * * ** ** ** ** * * * * ***** ** * ** consensus_557#0 CTCCGGAGTGCGTAT-GACTCCTTCAAATACCAGGGGTTGGACTTT-------------- 569 consensus_557#1 AGGGGGGTCCCACAAAGGCCCCACCGACAACTGCATCCCCAACAACCAGCTGAGTAAGCC 436 ** * * * * ** * * ** ** consensus_557#0 --------------------------------------------------- consensus_557#1 AGAAGCACTTGTGAGATTGGAGCAGGACGTGAAGAAGTTAAAGGCCGACCT 487 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |