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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[GAAAAACCCCCAAAACACACGGTGGCGATTCGCTGCCGCATGAGCCGGAGACTGAACCGTTTGAGGAAACAGGCAGGCTGTGCTGAGAACCCACCGTCATGTCAGGAGAGCTTGGATGATCCTCTGATCTCCAGCGTCAGATCTGAAGAAAAGGCGACGTGCATGCTGAAGATCACACCTGACAGAATCTTTCCATTTACGTTCCCCAATTTCCCTGATGAGGATGACCCCCTGGCTCTCAGTAATTTGAGGACATTGCCCGTGGATCCCATCGAAGTGACCGTGACGACAGATATTCCTGTCTTCAACCTTCAAGTTCGCAGCTATGAGCTGATGGGCTACCAGTCTGTCTCCACCTGGAAGGCCTTTAATTCTTACATCCCAGTCGGTTTGGTGAGACCCCTTCGCACCCTCTCAGAGGTTGAGGTGTTGCTCAGTGAGGAAGAGGAGGAGATCGCTCATTTGTCCTTCACTGCTCCTGAGGCTCTGCTGGGACCCCCCATTGCAAACCCCTTCAGAATCTTTAACCCTGCTCCAGGCCTGCGGGCGTACAAACCCGCACTGAAATACTTGGAGGGGGACCTGGAGTGGCACCTGTGCCCACTGCCCAGGTATCAAAC]
[+] EMBL CA590238 [GAAAAACCCCCAAAACACACGGTGGCGATTCGCTGCCGCATGAGCCGGAGACTGAACCGTTTGAGGAAACAGGCAGGCTGTGCTGAGAACCCACCGTCATGTCAGGAGAGCTTGGATGATCCTCTGATCTCCAGCGTCAGATCTGAAGAAAAGGCGACGTGCATGCTGAAGATCACACCTGACAGAATCTTTCCATTTACGTTCCCCAATTTCCCTGATGAGGATGACCCCCTGGCTCTCAGTAATTTGAGGACATTGCCCGTGGATCCCATCGAAGTGACCGTGACGACAGATATTCCTGTCTTCAACCTTCAAGTTCGCAGCTATGAGCTGATGGGCTACCAGTCTGTCTCCACCTGGAAGGCCTTTAATTCTTACATCCCAGTCGGTTTGGTGAGACCCCTTCGCACCCTCTCAGAGGTTGAGGTGTTGCTCAGTGAGGAAGAGGAGGAGATCGCTCATTTGTCCTTCACTGCTCCTGAGGCTCTGCTGGGACCCCCCATTGCAAACCCCTTCAGAATCTTTAACCCTGCTCCAGGCCTGCGGGCGTACAAACCCGCACTGAAATACTTGGAGGGGGACCTGGAGTGGCACCTGTGCCCACTGCCCAGGTATCAAAC]
consensusID : consensus_569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CACTTGGATTATTTGAACCCACATCCAGCAAATATGGAAAAACCCCCAAAACACACGGTGGCGATTCGCTGCCGCATGAGCCGGAGACTGAACCGTTTGAGGAAACAGGCAGGCTGTGCTGAGAACCCACCGTCATCTAAGAAAGCTGAAGAAAAGGCGACGTGCATGCTGAAGATCACACCTGACAGAATCTTTCCATTTACGTTCCCCAATTTCCCTGATGAGGATGACCCCCTGGCTCTCAGTAATTTGAGGACATTGCCCGTGGATCCCATCGAAGTGACCGTGACGACAGATATTCCTGTCTTCAACCTTCAAGTTCGCAGCTATGAGCTGATGGGCTACTAGTCTGTCTCCACCTGGAAGGCCTTTAATTCTTACATCCCAGTTGGTTTGGTGAGACCCCTTCGCACCCTCTCAGAGGTTGAGGTGTTGCTCAGTGAGGAAGAGGAGGAGATCGCTCATTTGTCCTTCACTGCTCCTGAGGCTCTGCTG]
[+] EMBL CA333165 [CACTTGGATTATTTGAACCCACATCCAGCAAATATGGAAAAACCCCCAAAACACACGGTGGCGATTCGCTGCCGCATGAGCCGGAGACTGAACCGTTTGAGGAAACAGGCAGGCTGTGCTGAGAACCCACCGTCATCTAAGAAAGCTGAAGAAAAGGCGACGTGCATGCTGAAGATCACACCTGACAGAATCTTTCCATTTACGTTCCCCAATTTCCCTGATGAGGATGACCCCCTGGCTCTCAGTAATTTGAGGACATTGCCCGTGGATCCCATCGAAGTGACCGTGACGACAGATATTCCTGTCTTCAACCTTCAAGTTCGCAGCTATGAGCTGATGGGCTACTAGTCTGTCTCCACCTGGAAGGCCTTTAATTCTTACATCCCAGTTGGTTTGGTGAGACCCCTTCGCACCCTCTCAGAGGTTGAGGTGTTGCTCAGTGAGGAAGAGGAGGAGATCGCTCATTTGTCCTTCACTGCTCCTGAGGCTCTGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_569#0 ------------------------------------GAAAAACCCCCAAAACACACGGTG 24
consensus_569#1 CACTTGGATTATTTGAACCCACATCCAGCAAATATGGAAAAACCCCCAAAACACACGGTG 60
************************
consensus_569#0 GCGATTCGCTGCCGCATGAGCCGGAGACTGAACCGTTTGAGGAAACAGGCAGGCTGTGCT 84
consensus_569#1 GCGATTCGCTGCCGCATGAGCCGGAGACTGAACCGTTTGAGGAAACAGGCAGGCTGTGCT 120
************************************************************
consensus_569#0 GAGAACCCACCGTCATGTCAGGAGAGCTTGGATGATCCTCTGATCTCCAGCGTCAGATCT 144
consensus_569#1 GAGAACCCACCGTCATCTAAGAAAG---------------------------------CT 147
**************** * ** * **
consensus_569#0 GAAGAAAAGGCGACGTGCATGCTGAAGATCACACCTGACAGAATCTTTCCATTTACGTTC 204
consensus_569#1 GAAGAAAAGGCGACGTGCATGCTGAAGATCACACCTGACAGAATCTTTCCATTTACGTTC 207
************************************************************
consensus_569#0 CCCAATTTCCCTGATGAGGATGACCCCCTGGCTCTCAGTAATTTGAGGACATTGCCCGTG 264
consensus_569#1 CCCAATTTCCCTGATGAGGATGACCCCCTGGCTCTCAGTAATTTGAGGACATTGCCCGTG 267
************************************************************
consensus_569#0 GATCCCATCGAAGTGACCGTGACGACAGATATTCCTGTCTTCAACCTTCAAGTTCGCAGC 324
consensus_569#1 GATCCCATCGAAGTGACCGTGACGACAGATATTCCTGTCTTCAACCTTCAAGTTCGCAGC 327
************************************************************
consensus_569#0 TATGAGCTGATGGGCTACCAGTCTGTCTCCACCTGGAAGGCCTTTAATTCTTACATCCCA 384
consensus_569#1 TATGAGCTGATGGGCTACTAGTCTGTCTCCACCTGGAAGGCCTTTAATTCTTACATCCCA 387
****************** *****************************************
consensus_569#0 GTCGGTTTGGTGAGACCCCTTCGCACCCTCTCAGAGGTTGAGGTGTTGCTCAGTGAGGAA 444
consensus_569#1 GTTGGTTTGGTGAGACCCCTTCGCACCCTCTCAGAGGTTGAGGTGTTGCTCAGTGAGGAA 447
** *********************************************************
consensus_569#0 GAGGAGGAGATCGCTCATTTGTCCTTCACTGCTCCTGAGGCTCTGCTGGGACCCCCCATT 504
consensus_569#1 GAGGAGGAGATCGCTCATTTGTCCTTCACTGCTCCTGAGGCTCTGCTG------------ 495
************************************************
consensus_569#0 GCAAACCCCTTCAGAATCTTTAACCCTGCTCCAGGCCTGCGGGCGTACAAACCCGCACTG 564
consensus_569#1 ------------------------------------------------------------
consensus_569#0 AAATACTTGGAGGGGGACCTGGAGTGGCACCTGTGCCCACTGCCCAGGTATCAAAC 620
consensus_569#1 --------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |