These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [CCAACGTTTCCATCCGAGCAGCACACACAAGATCAAGAAGCGCTTTCGGGGGATATAATAAACTCACCAAAGTCTCCGAACTTCTGACGAGAGTCGACTCCTTTCTGTGGGATTTACAGAGCGAAACGGGCGTAAAAGTCAACTTTTAAAACATCTTTCCTGCTGTGGCGTTGCGGTTCCCTCGCCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCGAGGGTGAAGCAGAGAAAACAGAAACCGAGTTGGACGGTGAGTTTGCTGCTGCAGACGAGAGGCCGGATCCCCTGAGGCCAACATGAGGAGAGCTCTGCTGTATGTGATCACTGTTTACGCCTCAGCGCCTGTCGTTCTCTACCTGTTCCCCTGGATACTGGGACACATCGTATTCTCTCACCTTTTGAGGTTTCCATTCTTCGTGGATCTCAGCAGGCCAGAGCTTGTGCTGAACCACACATGCAACTTCTACCTGAACACGGACGAGGGCGTCTCGGTCGGAGTGTGGTAGGTCGTTTGCTGCTTCCTCTTTTGTC] [+] EMBL CA333196 [CCAACGTTTCCATCCGAGCAGCACACACAAGATCAAGAAGCGCTTTCGGGGGATATAATAAACTCACCAAAGTCTCCGAACTTCTGACGAGAGTCGACTCCTTTCTGTGGGATTTACAGAGCGAAACGGGCGTAAAAGTCAACTTTTAAAACATCTTTCCTGCTGTGGCGTTGCGGTTCCCTCGCCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCGAGGGTGAAGCAGAGAAAACAGAAACCGAGTTGGACGGTGAGTTTGCTGCTGCAGACGAGAGGCCGGATCCCCTGAGGCCAACATGAGGAGAGCTCTGCTGTATGTGATCACTGTTTACGCCTCAGCGCCTGTCGTTCTCTACCTGTTCCCCTGGATACTGGGACACATCGTATTCTCTCACCTTTTGAGGTTTCCATTCTTCGTGGATCTCAGCAGGCCAGAGCTTGTGCTGAACCACACATGCAACTTCTACCTGAACACGGACGAGGGCGTCTCGGTCGGAGTGTGGTAGGTCGTTTGCTGCTTCCTCTTTTGTC] consensusID : consensus_571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [GTGTTTCTGCGCTATGGGGGTGACCTCTATCTGCCTTTTGAAGCAAAAGTCTTTTCCTTTTCCTTTCCTCTTTCTATTTTCTCAGTAAAACCTCAATGGATCACACTCCTCCTTTGGCTTGAGTCGGNGCATCAGCCCTGAAAGCATGACATGATGTGATTTGTCACATTTGAACGTTGACCCCTTTTATGATCTCTCTTTCACAATCCTCGAGGTGTCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCCGAGGGG] [+] EMBL FR0061035 [GTGTTTCTGCGCTATGGGGGTGACCTCTATCTGCCTTTTGAAGCAAAAGTCTTTTCCTTTTCCTTTCCTCTTTCTATTTTCTCAGTAAAACCTCAATGGATCACACTCCTCCTTTGGCTTGAGTCGGNGCATCAGCCCTGAAAGCATGACATGATGTGATTTGTCACATTTGAACGTTGACCCCTTTTATGATCTCTCTTTCACAATCCTCGAGGTGTCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCCGAGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_571#0 CCAACGTTTCCATCCGAGCAGCACACACAAGATCAAGAAGCGCTTTCGGGGGATATAATA 60 consensus_571#1 ------------------------------------------------------------ consensus_571#0 AACTCACCAAAGTCTCCGAACTTCTGACGAGAGTCGACTCCTTTCTGTGGGATTTACAGA 120 consensus_571#1 ------------------------------------------------------------ consensus_571#0 GCGAAACGGGCGTAAAAGTCAACTTTTAAAACATCTTTCCTGCTGTGGCG-TTGCGGTTC 179 consensus_571#1 ----------------------------GTGTTTCTGCGCTATGGGGGTGACCTCTATCT 32 *** ** * ** * * * consensus_571#0 CCTCGCCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCGAGGGTGAAGCAGAGAAA 239 consensus_571#1 GCCTTTTGAAGCAAAAGTCTTTTCCTTTTCCTTTCCTCTTTCTAT--TTTCTCAGTAAAA 90 * * * * * * * * ** * * *** * * *** *** consensus_571#0 ACAGAAACCGAGTTGGACGGTGAGTTTGCTGCTGCAGACGAGAGGCCGGATCCCCTGAGG 299 consensus_571#1 CCTCAA--TGGATCACACTCCTCCTTTG--GCTTGAGTCGGNGCATCAG---CCCTGAAA 143 * ** * * ** **** *** ** ** * * ****** consensus_571#0 CCAACATGAGGAGAGCTCTGCTGTATGTGATCACTGTTTACGCCTCAGCGCCTGTCGTTC 359 consensus_571#1 GCATGACATGATGTGATTTGTCACATTTGAACGTTGACCCC-TTTTATGATCTCTCTTTC 202 ** * * * * * ** ** *** * ** * * * ** ** *** consensus_571#0 TCTACCTGTTCCCCTGGATACTGGGACACATCGTATTCTCTCACCTTTTGAGGTTTCCAT 419 consensus_571#1 ACAA-----TCCTCGAGGTGTCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCCGA 257 * * *** * * * **** ** ** ** * **** consensus_571#0 TCTTCGTGGATCTCAGCAGGCCAGAGCTTGTGCTGAACCACACATGCAACTTCTACCTGA 479 consensus_571#1 GGGG-------------------------------------------------------- 261 consensus_571#0 ACACGGACGAGGGCGTCTCGGTCGGAGTGTGGTAGGTCGTTTGCTGCTTCCTCTTTTGTC 539 consensus_571#1 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |