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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[CCAACGTTTCCATCCGAGCAGCACACACAAGATCAAGAAGCGCTTTCGGGGGATATAATAAACTCACCAAAGTCTCCGAACTTCTGACGAGAGTCGACTCCTTTCTGTGGGATTTACAGAGCGAAACGGGCGTAAAAGTCAACTTTTAAAACATCTTTCCTGCTGTGGCGTTGCGGTTCCCTCGCCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCGAGGGTGAAGCAGAGAAAACAGAAACCGAGTTGGACGGTGAGTTTGCTGCTGCAGACGAGAGGCCGGATCCCCTGAGGCCAACATGAGGAGAGCTCTGCTGTATGTGATCACTGTTTACGCCTCAGCGCCTGTCGTTCTCTACCTGTTCCCCTGGATACTGGGACACATCGTATTCTCTCACCTTTTGAGGTTTCCATTCTTCGTGGATCTCAGCAGGCCAGAGCTTGTGCTGAACCACACATGCAACTTCTACCTGAACACGGACGAGGGCGTCTCGGTCGGAGTGTGGTAGGTCGTTTGCTGCTTCCTCTTTTGTC]
[+] EMBL CA333196 [CCAACGTTTCCATCCGAGCAGCACACACAAGATCAAGAAGCGCTTTCGGGGGATATAATAAACTCACCAAAGTCTCCGAACTTCTGACGAGAGTCGACTCCTTTCTGTGGGATTTACAGAGCGAAACGGGCGTAAAAGTCAACTTTTAAAACATCTTTCCTGCTGTGGCGTTGCGGTTCCCTCGCCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCGAGGGTGAAGCAGAGAAAACAGAAACCGAGTTGGACGGTGAGTTTGCTGCTGCAGACGAGAGGCCGGATCCCCTGAGGCCAACATGAGGAGAGCTCTGCTGTATGTGATCACTGTTTACGCCTCAGCGCCTGTCGTTCTCTACCTGTTCCCCTGGATACTGGGACACATCGTATTCTCTCACCTTTTGAGGTTTCCATTCTTCGTGGATCTCAGCAGGCCAGAGCTTGTGCTGAACCACACATGCAACTTCTACCTGAACACGGACGAGGGCGTCTCGGTCGGAGTGTGGTAGGTCGTTTGCTGCTTCCTCTTTTGTC]
consensusID : consensus_571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence
[GTGTTTCTGCGCTATGGGGGTGACCTCTATCTGCCTTTTGAAGCAAAAGTCTTTTCCTTTTCCTTTCCTCTTTCTATTTTCTCAGTAAAACCTCAATGGATCACACTCCTCCTTTGGCTTGAGTCGGNGCATCAGCCCTGAAAGCATGACATGATGTGATTTGTCACATTTGAACGTTGACCCCTTTTATGATCTCTCTTTCACAATCCTCGAGGTGTCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCCGAGGGG]
[+] EMBL FR0061035 [GTGTTTCTGCGCTATGGGGGTGACCTCTATCTGCCTTTTGAAGCAAAAGTCTTTTCCTTTTCCTTTCCTCTTTCTATTTTCTCAGTAAAACCTCAATGGATCACACTCCTCCTTTGGCTTGAGTCGGNGCATCAGCCCTGAAAGCATGACATGATGTGATTTGTCACATTTGAACGTTGACCCCTTTTATGATCTCTCTTTCACAATCCTCGAGGTGTCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCCGAGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_571#0 CCAACGTTTCCATCCGAGCAGCACACACAAGATCAAGAAGCGCTTTCGGGGGATATAATA 60
consensus_571#1 ------------------------------------------------------------
consensus_571#0 AACTCACCAAAGTCTCCGAACTTCTGACGAGAGTCGACTCCTTTCTGTGGGATTTACAGA 120
consensus_571#1 ------------------------------------------------------------
consensus_571#0 GCGAAACGGGCGTAAAAGTCAACTTTTAAAACATCTTTCCTGCTGTGGCG-TTGCGGTTC 179
consensus_571#1 ----------------------------GTGTTTCTGCGCTATGGGGGTGACCTCTATCT 32
*** ** * ** * * *
consensus_571#0 CCTCGCCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCGAGGGTGAAGCAGAGAAA 239
consensus_571#1 GCCTTTTGAAGCAAAAGTCTTTTCCTTTTCCTTTCCTCTTTCTAT--TTTCTCAGTAAAA 90
* * * * * * * * ** * * *** * * *** ***
consensus_571#0 ACAGAAACCGAGTTGGACGGTGAGTTTGCTGCTGCAGACGAGAGGCCGGATCCCCTGAGG 299
consensus_571#1 CCTCAA--TGGATCACACTCCTCCTTTG--GCTTGAGTCGGNGCATCAG---CCCTGAAA 143
* ** * * ** **** *** ** ** * * ******
consensus_571#0 CCAACATGAGGAGAGCTCTGCTGTATGTGATCACTGTTTACGCCTCAGCGCCTGTCGTTC 359
consensus_571#1 GCATGACATGATGTGATTTGTCACATTTGAACGTTGACCCC-TTTTATGATCTCTCTTTC 202
** * * * * * ** ** *** * ** * * * ** ** ***
consensus_571#0 TCTACCTGTTCCCCTGGATACTGGGACACATCGTATTCTCTCACCTTTTGAGGTTTCCAT 419
consensus_571#1 ACAA-----TCCTCGAGGTGTCAGGACGAGCGCCGCTCCGGATCCCCCTGCAGCTTCCGA 257
* * *** * * * **** ** ** ** * ****
consensus_571#0 TCTTCGTGGATCTCAGCAGGCCAGAGCTTGTGCTGAACCACACATGCAACTTCTACCTGA 479
consensus_571#1 GGGG-------------------------------------------------------- 261
consensus_571#0 ACACGGACGAGGGCGTCTCGGTCGGAGTGTGGTAGGTCGTTTGCTGCTTCCTCTTTTGTC 539
consensus_571#1 ------------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |