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Takifugu rubripes
cluster # 574 cluster # 574       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_574#0 length = 534 sequences # 1  
 consensus_574#1 length = 247 sequences # 1  
consensusID : consensus_574#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence 
                              [GAGCTAATACTTAGCAACAGTCAACGCGAAATGCCTTTTAAACTCATTAACAAGCACAATTAAAATGCCAGAGTCTCAAAGTTCATCAGCAAGTTGGAGAATATGGTTTTGAATCTCTGCCTACCGGACTTTAACACAACAGTACATTGCAACAAGCTGTGTGCAGACGGCTATGATGTCACAAACCTTGTATCTGCTGAACCCGCTGTCCGGAGGCGAGGCTTCAAATTGGAGTACTTCCTGCGTCCGCCAGTGCAGGTGACGCTGAAGTTTGGTTTCCTGGTGGAGCTGTGCAGGCTGGATGTTGAGCTGTGGCCTTGGGGTATGGACCAAGGACAGGCCTGTAAGAGGCTGGAAATCAGCACCAGTTCAGATCGAGCTCAAGACCAGAAGAGGTTTCATAAGAATGACAGAGTAAAGATGCAGATGAGAGATCAACATCAAGACACCAGAGGAGTACGCAGCAGCAAGATGTTCCCTGGTCAGCAGTGGAGCCTTCAGGCGCAGCAGTGGGGAGACGAGGCGCTACCTGAA]

[+] EMBL CA333208             [GAGCTAATACTTAGCAACAGTCAACGCGAAATGCCTTTTAAACTCATTAACAAGCACAATTAAAATGCCAGAGTCTCAAAGTTCATCAGCAAGTTGGAGAATATGGTTTTGAATCTCTGCCTACCGGACTTTAACACAACAGTACATTGCAACAAGCTGTGTGCAGACGGCTATGATGTCACAAACCTTGTATCTGCTGAACCCGCTGTCCGGAGGCGAGGCTTCAAATTGGAGTACTTCCTGCGTCCGCCAGTGCAGGTGACGCTGAAGTTTGGTTTCCTGGTGGAGCTGTGCAGGCTGGATGTTGAGCTGTGGCCTTGGGGTATGGACCAAGGACAGGCCTGTAAGAGGCTGGAAATCAGCACCAGTTCAGATCGAGCTCAAGACCAGAAGAGGTTTCATAAGAATGACAGAGTAAAGATGCAGATGAGAGATCAACATCAAGACACCAGAGGAGTACGCAGCAGCAAGATGTTCCCTGGTCAGCAGTGGAGCCTTCAGGCGCAGCAGTGGGGAGACGAGGCGCTACCTGAA]




>consensus_574#0
GAGCTAATACTTAGCAACAGTCAACGCGAAATGCCTTTTAAACTCATTAACAAGCACAAT
TAAAATGCCAGAGTCTCAAAGTTCATCAGCAAGTTGGAGAATATGGTTTTGAATCTCTGC
CTACCGGACTTTAACACAACAGTACATTGCAACAAGCTGTGTGCAGACGGCTATGATGTC
ACAAACCTTGTATCTGCTGAACCCGCTGTCCGGAGGCGAGGCTTCAAATTGGAGTACTTC
CTGCGTCCGCCAGTGCAGGTGACGCTGAAGTTTGGTTTCCTGGTGGAGCTGTGCAGGCTG
GATGTTGAGCTGTGGCCTTGGGGTATGGACCAAGGACAGGCCTGTAAGAGGCTGGAAATC
AGCACCAGTTCAGATCGAGCTCAAGACCAGAAGAGGTTTCATAAGAATGACAGAGTAAAG
ATGCAGATGAGAGATCAACATCAAGACACCAGAGGAGTACGCAGCAGCAAGATGTTCCCT
GGTCAGCAGTGGAGCCTTCAGGCGCAGCAGTGGGGAGACGAGGCGCTACCTGAA

consensusID : consensus_574#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence 
                              [TTCAGGCGGCAGCAGTGGGGAGACGAGGCGCTACCTGAACCTCAGCAGGTGACCAGCGCATCCTTGAAGACTGAGTCCAGCTCCTCTGAAGCACAGTTTAAACTGGGAGGTCGGTGTGAACTTCGAGAGGACACCCGAGGCTCTCTCTCCAATNTAAGGTACGGCCCACGGCCCCCGGTCCCCGGTGGCGCCTCCTCCGCACCCCGGTTGGCTGGCGGGAGGGGGGGACTGTGGAGCCCGGGGACCC]

[+] EMBL FR0060586            [TTCAGGCGGCAGCAGTGGGGAGACGAGGCGCTACCTGAACCTCAGCAGGTGACCAGCGCATCCTTGAAGACTGAGTCCAGCTCCTCTGAAGCACAGTTTAAACTGGGAGGTCGGTGTGAACTTCGAGAGGACACCCGAGGCTCTCTCTCCAATNTAAGGTACGGCCCACGGCCCCCGGTCCCCGGTGGCGCCTCCTCCGCACCCCGGTTGGCTGGCGGGAGGGGGGGACTGTGGAGCCCGGGGACCC]




>consensus_574#1
TTCAGGCGGCAGCAGTGGGGAGACGAGGCGCTACCTGAACCTCAGCAGGTGACCAGCGCA
TCCTTGAAGACTGAGTCCAGCTCCTCTGAAGCACAGTTTAAACTGGGAGGTCGGTGTGAA
CTTCGAGAGGACACCCGAGGCTCTCTCTCCAATNTAAGGTACGGCCCACGGCCCCCGGTC
CCCGGTGGCGCCTCCTCCGCACCCCGGTTGGCTGGCGGGAGGGGGGGACTGTGGAGCCCG
GGGACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_574#0      GAGCTAATACTTAGCAACAGTCAACGCGAAATGCCTTTTAAACTCATTAACAAGCACAAT 60
consensus_574#1      ------------------------------------------------------------
                                                                                 

consensus_574#0      TAAAATGCCAGAGTCTCAAAGTTCATCAGCAAGTTGGAGAATATGGTTTTGAATCTCTGC 120
consensus_574#1      --------------TTCAGGCGGCAGCAGTGGGGAGACGAGGCGCTACCTGAACCTCAGC 46
                                    ***     ** ***   *  *  **         **** *** **

consensus_574#0      CTACCGGACTTTAACACAACAGTACATTGCAACAAGCTGTGTGCAGACGGCTATGATGTC 180
consensus_574#1      AGGT--GACCAGCGCATCCTTGAAGACTGAGTCCAGCTCCTCTGAAGCACAGTTTAAACT 104
                           ***     **     * * * **   * ****      *  *     * *    

consensus_574#0      ACAAACCTTGTATCTGCTG-AACCCGCTGTCCGGAGGCGAGGCTTCAAATTGGAGTACTT 239
consensus_574#1      GGGAGGTCGGTGTGAACTTCGAGAGGACACCCGAGGCTCTCTCTCCAATNTAAGGTACGG 164
                        *     ** *   **   *   *    ***  *      ** ***  *   ****  

consensus_574#0      CCTGCGTCCGCCAGTGCA-GGTGACGCTGAAGTTTGGTTTCCTGGTGGAGCTGTGCAGGC 298
consensus_574#1      CCCACGGCCCCCGGTCCCCGGTGGCGCCT--CCTCCGCACCCCGGTTGGCTGGCGGGAGG 222
                     **  ** ** ** ** *  **** ***      *  *   ** *** *    * *   * 

consensus_574#0      TGGATGTTGAGCTGTGGCCTTGGGGTATGGACCAAGGACAGGCCTGTAAGAGGCTGGAAA 358
consensus_574#1      GGGGGACTG---TGGAGCCCGGGGACCC-------------------------------- 247
                      **    **   **  ***  ***                                    

consensus_574#0      TCAGCACCAGTTCAGATCGAGCTCAAGACCAGAAGAGGTTTCATAAGAATGACAGAGTAA 418
consensus_574#1      ------------------------------------------------------------
                                                                                 

consensus_574#0      AGATGCAGATGAGAGATCAACATCAAGACACCAGAGGAGTACGCAGCAGCAAGATGTTCC 478
consensus_574#1      ------------------------------------------------------------
                                                                                 

consensus_574#0      CTGGTCAGCAGTGGAGCCTTCAGGCGCAGCAGTGGGGAGACGAGGCGCTACCTGAA 534
consensus_574#1      --------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)