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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 58 cluster # 58       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_58#0 length = 559 sequences # 1  
 consensus_58#1 length = 254 sequences # 1  
consensusID : consensus_58#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence 
                              [CAGCATTATTTTGTGTCGTTTTATCTGCCCGTCGTTTGTGACGTTTTTTTGTTTTGTTTTAAATAGTTTTTTTTATTAACAATTCCCGTAATCTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGATTTTCTATGGGACGACGAAACGTCAAAAGAGAATGTTTGCACGTCTGATCCTGGACAAGGCCTACAGCTTTTTCCTGCCTCCATTCAGCTTTCAGATCCGAGTTGGAGCTCTTTACCTGTTGTACAGTCTGTATGGATGTCAGACAGCGTCACCTCAAGAACAGATCCGTGTTCCTCTGAAGGACTGGGAAGACATAAAGAGGTTTGAAAAGGATGCAGTGGATGCTCAGCACCTGGATGTTGTTTACATACTGCGACAGCTGATGGCGCAGAAAGCTTTCTACTTTACCGCCATGGCCACCCTGCTC]

[+] EMBL BU808458             [CAGCATTATTTTGTGTCGTTTTATCTGCCCGTCGTTTGTGACGTTTTTTTGTTTTGTTTTAAATAGTTTTTTTTATTAACAATTCCCGTAATCTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGATTTTCTATGGGACGACGAAACGTCAAAAGAGAATGTTTGCACGTCTGATCCTGGACAAGGCCTACAGCTTTTTCCTGCCTCCATTCAGCTTTCAGATCCGAGTTGGAGCTCTTTACCTGTTGTACAGTCTGTATGGATGTCAGACAGCGTCACCTCAAGAACAGATCCGTGTTCCTCTGAAGGACTGGGAAGACATAAAGAGGTTTGAAAAGGATGCAGTGGATGCTCAGCACCTGGATGTTGTTTACATACTGCGACAGCTGATGGCGCAGAAAGCTTTCTACTTTACCGCCATGGCCACCCTGCTC]




>consensus_58#0
CAGCATTATTTTGTGTCGTTTTATCTGCCCGTCGTTTGTGACGTTTTTTTGTTTTGTTTT
AAATAGTTTTTTTTATTAACAATTCCCGTAATCTACGCGTTCGATTTTGTGAAAATGAAG
CAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCG
ATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAA
GTTCTTCCAGATTTTCTATGGGACGACGAAACGTCAAAAGAGAATGTTTGCACGTCTGAT
CCTGGACAAGGCCTACAGCTTTTTCCTGCCTCCATTCAGCTTTCAGATCCGAGTTGGAGC
TCTTTACCTGTTGTACAGTCTGTATGGATGTCAGACAGCGTCACCTCAAGAACAGATCCG
TGTTCCTCTGAAGGACTGGGAAGACATAAAGAGGTTTGAAAAGGATGCAGTGGATGCTCA
GCACCTGGATGTTGTTTACATACTGCGACAGCTGATGGCGCAGAAAGCTTTCTACTTTAC
CGCCATGGCCACCCTGCTC

consensusID : consensus_58#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence 
                              [TTATTAACAATTCCCGTAATGTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGATTTTCTAGTAAATCTAATCTCGAACACACACACACACAGAGACATGGTGGATAGGGGTGCATCATCACTCTTCTT]

[+] EMBL FR0063014            [TTATTAACAATTCCCGTAATGTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGATTTTCTAGTAAATCTAATCTCGAACACACACACACACAGAGACATGGTGGATAGGGGTGCATCATCACTCTTCTT]




>consensus_58#1
TTATTAACAATTCCCGTAATGTACGCGTTCGATTTTGTGAAAATGAAGCAGTGACATGGA
CTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCGATTCCAACGATC
AGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAAGTTCTTCCAGAT
TTTCTAGTAAATCTAATCTCGAACACACACACACACAGAGACATGGTGGATAGGGGTGCA
TCATCACTCTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_58#0      CAGCATTATTTTGTGTCGTTTTATCTGCCCGTCGTTTGTGACGTTTTTTTGTTTTGTTTT 60
consensus_58#1      ------------------------------------------------------------
                                                                                

consensus_58#0      AAATAGTTTTTTTTATTAACAATTCCCGTAATCTACGCGTTCGATTTTGTGAAAATGAAG 120
consensus_58#1      ------------TTATTAACAATTCCCGTAATGTACGCGTTCGATTTTGTGAAAATGAAG 48
                                ******************** ***************************

consensus_58#0      CAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCG 180
consensus_58#1      CAGTGACATGGACTTTTGTCTGAAGCAGGTGCAGTCAGACTGCGAGGAGCTACTGAGCCG 108
                    ************************************************************

consensus_58#0      ATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAA 240
consensus_58#1      ATTCCAACGATCAGAATCTGTCCGCTTCGAAAATTTCTCCGAAATATGGAGGGAAATGAA 168
                    ************************************************************

consensus_58#0      GTTCTTCCAGATTTTCTATGGGACGACGAAACGTCAAAAGAGAATGTTTGCACGTCTGAT 300
consensus_58#1      GTTCTTCCAGATTTTCTA---GTAAATCTAATCTCGAACACACACACACACA-GAGACAT 224
                    ******************   *   *   **  ** **     *      ** *    **

consensus_58#0      CCTGGACAAGGCCTACAGCTTTTTCCTGCCTCCATTCAGCTTTCAGATCCGAGTTGGAGC 360
consensus_58#1      GGTGGATAGGGG-TGCATCATCACTCTTCTT----------------------------- 254
                      **** * **  * ** * *    ** * *                             

consensus_58#0      TCTTTACCTGTTGTACAGTCTGTATGGATGTCAGACAGCGTCACCTCAAGAACAGATCCG 420
consensus_58#1      ------------------------------------------------------------
                                                                                

consensus_58#0      TGTTCCTCTGAAGGACTGGGAAGACATAAAGAGGTTTGAAAAGGATGCAGTGGATGCTCA 480
consensus_58#1      ------------------------------------------------------------
                                                                                

consensus_58#0      GCACCTGGATGTTGTTTACATACTGCGACAGCTGATGGCGCAGAAAGCTTTCTACTTTAC 540
consensus_58#1      ------------------------------------------------------------
                                                                                

consensus_58#0      CGCCATGGCCACCCTGCTC 559
consensus_58#1      -------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)