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Takifugu rubripes
cluster # 597 cluster # 597       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_597#0 length = 602 sequences # 1  
 consensus_597#1 length = 196 sequences # 1  
consensusID : consensus_597#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence 
                              [TTGCTGTGTAGTACCTCTTGTTCGGGGTTGCATTGCCTGGATCGTGGGATCAGCTGTTACTAGTACTTTGCTGCAGGTGGAAGAACAATCTCTACTGGACAACGATGAAGACGAATCAGAAGAAGAATGGACAAATGTGATGCAAGATGTAAATGAAATGTTTGAGATGTCTTAAGCTGTACACATGTTGAACTCTGAGTGTAAGAAATGTGTTTCTAGGAAAATGACGTAATGCATTTAAATTTCATGAAGTGAAATGATGTAATACTGACAATGAGAATCTAGACGCATTTAACGATAAACAGGAGGGAAATGTGAGAAGAATTATTGTTGTTGTTATCGTTTCAATGCTATAGTAAGTATAGTAAGTAGATTTAGAATGTTTAATCAAAAGGAATGTATGAGTGTTTGAACCAAGTGTTGATGCTGTTAGGTACCCAGCACTGGGAGGTACCATGTTCAAGGACACGAGGAAGTCGTAGAGATAGGAGGAGAAGGAATCATGAGGTCAGATTGACATAAATGTTGTGTGCACCAAATAAAAGAGGAGAGCGAGCAGCAGACGGGCAGAGTTGAGAGAGGAAGCTTGAACTGCTCGTCAG]

[+] EMBL CA847242             [TTGCTGTGTAGTACCTCTTGTTCGGGGTTGCATTGCCTGGATCGTGGGATCAGCTGTTACTAGTACTTTGCTGCAGGTGGAAGAACAATCTCTACTGGACAACGATGAAGACGAATCAGAAGAAGAATGGACAAATGTGATGCAAGATGTAAATGAAATGTTTGAGATGTCTTAAGCTGTACACATGTTGAACTCTGAGTGTAAGAAATGTGTTTCTAGGAAAATGACGTAATGCATTTAAATTTCATGAAGTGAAATGATGTAATACTGACAATGAGAATCTAGACGCATTTAACGATAAACAGGAGGGAAATGTGAGAAGAATTATTGTTGTTGTTATCGTTTCAATGCTATAGTAAGTATAGTAAGTAGATTTAGAATGTTTAATCAAAAGGAATGTATGAGTGTTTGAACCAAGTGTTGATGCTGTTAGGTACCCAGCACTGGGAGGTACCATGTTCAAGGACACGAGGAAGTCGTAGAGATAGGAGGAGAAGGAATCATGAGGTCAGATTGACATAAATGTTGTGTGCACCAAATAAAAGAGGAGAGCGAGCAGCAGACGGGCAGAGTTGAGAGAGGAAGCTTGAACTGCTCGTCAG]




>consensus_597#0
TTGCTGTGTAGTACCTCTTGTTCGGGGTTGCATTGCCTGGATCGTGGGATCAGCTGTTAC
TAGTACTTTGCTGCAGGTGGAAGAACAATCTCTACTGGACAACGATGAAGACGAATCAGA
AGAAGAATGGACAAATGTGATGCAAGATGTAAATGAAATGTTTGAGATGTCTTAAGCTGT
ACACATGTTGAACTCTGAGTGTAAGAAATGTGTTTCTAGGAAAATGACGTAATGCATTTA
AATTTCATGAAGTGAAATGATGTAATACTGACAATGAGAATCTAGACGCATTTAACGATA
AACAGGAGGGAAATGTGAGAAGAATTATTGTTGTTGTTATCGTTTCAATGCTATAGTAAG
TATAGTAAGTAGATTTAGAATGTTTAATCAAAAGGAATGTATGAGTGTTTGAACCAAGTG
TTGATGCTGTTAGGTACCCAGCACTGGGAGGTACCATGTTCAAGGACACGAGGAAGTCGT
AGAGATAGGAGGAGAAGGAATCATGAGGTCAGATTGACATAAATGTTGTGTGCACCAAAT
AAAAGAGGAGAGCGAGCAGCAGACGGGCAGAGTTGAGAGAGGAAGCTTGAACTGCTCGTC
AG

consensusID : consensus_597#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 196
fasta sequence 
                              [GCACGAGGTTATGTTCCCAGCACTGGGAGGTATCATGTTCAAGGACACGAGGAAGTCGTAGAGATAGGAGGAGAAGGAATCATGAAGTTGTTTTGATACCAATGTTGTGTGAACCAAATAAAAGAGGAGAGCGAGCAGCAGACTGACGGAGTTGAGAGAGGAAGCTTGAACTGCTCGTCAGCTCTCCCTTGCAAGG]

[+] EMBL CA333488             [GCACGAGGTTATGTTCCCAGCACTGGGAGGTATCATGTTCAAGGACACGAGGAAGTCGTAGAGATAGGAGGAGAAGGAATCATGAAGTTGTTTTGATACCAATGTTGTGTGAACCAAATAAAAGAGGAGAGCGAGCAGCAGACTGACGGAGTTGAGAGAGGAAGCTTGAACTGCTCGTCAGCTCTCCCTTGCAAGG]




>consensus_597#1
GCACGAGGTTATGTTCCCAGCACTGGGAGGTATCATGTTCAAGGACACGAGGAAGTCGTA
GAGATAGGAGGAGAAGGAATCATGAAGTTGTTTTGATACCAATGTTGTGTGAACCAAATA
AAAGAGGAGAGCGAGCAGCAGACTGACGGAGTTGAGAGAGGAAGCTTGAACTGCTCGTCA
GCTCTCCCTTGCAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_597#0      TTGCTGTGTAGTACCTCTTGTTCGGGGTTGCATTGCCTGGATCGTGGGATCAGCTGTTAC 60
consensus_597#1      ------------------------------------------------------------
                                                                                 

consensus_597#0      TAGTACTTTGCTGCAGGTGGAAGAACAATCTCTACTGGACAACGATGAAGACGAATCAGA 120
consensus_597#1      ------------------------------------------------------------
                                                                                 

consensus_597#0      AGAAGAATGGACAAATGTGATGCAAGATGTAAATGAAATGTTTGAGATGTCTTAAGCTGT 180
consensus_597#1      ------------------------------------------------------------
                                                                                 

consensus_597#0      ACACATGTTGAACTCTGAGTGTAAGAAATGTGTTTCTAGGAAAATGACGTAATGCATTTA 240
consensus_597#1      ------------------------------------------------------------
                                                                                 

consensus_597#0      AATTTCATGAAGTGAAATGATGTAATACTGACAATGAGAATCTAGACGCATTTAACGATA 300
consensus_597#1      ------------------------------------------------------------
                                                                                 

consensus_597#0      AACAGGAGGGAAATGTGAGAAGAATTATTGTTGTTGTTATCGTTTCAATGCTATAGTAAG 360
consensus_597#1      ------------------------------------------------------------
                                                                                 

consensus_597#0      TATAGTAAGTAGATTTAGAATGTTTAATCAAAAGGAATGTATGAGTGTTTGAACCAAGTG 420
consensus_597#1      ------------------------------------------------------------
                                                                                 

consensus_597#0      TTGATGCTGTTAGGTACCCAGCACTGGGAGGTACCATGTTCAAGGACACGAGGAAGTCGT 480
consensus_597#1      -GCACGAGGTTATGTTCCCAGCACTGGGAGGTATCATGTTCAAGGACACGAGGAAGTCGT 59
                        * *  **** ** ***************** **************************

consensus_597#0      AGAGATAGGAGGAGAAGGAATCATGAGGTCAGATTGACATAAATGTTGTGTGCACCAAAT 540
consensus_597#1      AGAGATAGGAGGAGAAGGAATCATGAAGTTGTTTTGATACCAATGTTGTGTGAACCAAAT 119
                     ************************** **    **** *  *********** *******

consensus_597#0      AAAAGAGGAGAGCGAGCAGCAGACGGGCAGAGTTGAGAGAGGAAGCTTGAACTGCTCGTC 600
consensus_597#1      AAAAGAGGAGAGCGAGCAGCAGACTGACGGAGTTGAGAGAGGAAGCTTGAACTGCTCGTC 179
                     ************************ * * *******************************

consensus_597#0      AG--------------- 602
consensus_597#1      AGCTCTCCCTTGCAAGG 196
                     **


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)