These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [ATTTAAATAAAAATAAAGAACAATAGCTTTAAAGATTAACCAGCCCTTTAGTTTCTTTGGCTGAATAAAATTGGACTTCTGGCAGGTTTTTTAGACATTTCCCCTCTTATCCAAGAGGCTTGTTAGATAAGAGGAGAACGGAAGTTTACATGAATTCCAAAGATTCTCGTCTAATGAGAACATTCATTAACATATATCTTTAGTTATTAATTAAATTAAATGAAATTAATTAAAAGGGCTCAGACTCAAGTAGACTTTGTTTCTGTCTCAGGAATTTTCATGATGTGTGCTGACATGTACTCCCAACCTTTTGCAGCTTAAAAGTATGTGTAATTTGTAATTTACACTGTTGTATTTGGCTCGCAAATGGGCTTAGCAGCCATTCCAGTCTATGTACACCTGAAGACTGGTCTCTCTCTGAATGTATATGAATGGATCACCGACAGTAGTGTGCCTCTGACACATTCTANCTCCTTGTTTGCTAAGTCCAGAAAAACACTCGAATCCCCGAAAAAATTTAAAGCGGGGCACAGAGTAACGCCTGCATTCNTCNGCCGCACTCAGCAAGAAACACGGAGCAAGANAAGGGGCGCCCGCCAAAAAAGACAGGAGAGNCGAANNAAAAACCNACACGCAGCG] [+] EMBL BU807870 [ATTTAAATAAAAATAAAGAACAATAGCTTTAAAGATTAACCAGCCCTTTAGTTTCTTTGGCTGAATAAAATTGGACTTCTGGCAGGTTTTTTAGACATTTCCCCTCTTATCCAAGAGGCTTGTTAGATAAGAGGAGAACGGAAGTTTACATGAATTCCAAAGATTCTCGTCTAATGAGAACATTCATTAACATATATCTTTAGTTATTAATTAAATTAAATGAAATTAATTAAAAGGGCTCAGACTCAAGTAGACTTTGTTTCTGTCTCAGGAATTTTCATGATGTGTGCTGACATGTACTCCCAACCTTTTGCAGCTTAAAAGTATGTGTAATTTGTAATTTACACTGTTGTATTTGGCTCGCAAATGGGCTTAGCAGCCATTCCAGTCTATGTACACCTGAAGACTGGTCTCTCTCTGAATGTATATGAATGGATCACCGACAGTAGTGTGCCTCTGACACATTCTANCTCCTTGTTTGCTAAGTCCAGAAAAACACTCGAATCCCCGAAAAAATTTAAAGCGGGGCACAGAGTAACGCCTGCATTCNTCNGCCGCACTCAGCAAGAAACACGGAGCAAGANAAGGGGCGCCCGCCAAAAAAGACAGGAGAGNCGAANNAAAAACCNACACGCAGCG] consensusID : consensus_6#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CAGCTTAAAAGTATGTGTAATTTGTTGTATTTGTCTCACAAATGGCCTTAGCAGCCATTCCAGTCTATGTACACCTGACGACTGGTCTCTCTCTGAATGTATATGAATGGATCACTGACAGTATGCTGCCTCTGACACATTTTAGCTCCTTGTTTTCTAACTCCAGAAGAACACTGATATTTTGGGAAGCATTTAACCCACAACAGAGCTATGACATTCATTTTTGGCCTTTATTTTGATGAAATTGTGAGCGCTTGTGTTGTCTGATTTATTTACCTCACGCAGTTCTTATTTTGCATTGTAGTCAGTTAGATTTTTTTATGACCCTAAATAATGCAACTCAGTTCAGCTTTTACCAGAAACGGGTTCAGGGGTGTCAGACAGAGCCGTGTTGGACATTGCTTGCCTCAGGCTCACCCTTTTGTTAGTGCTACACACTTGTGTTTTACTGCTGTAAGTGTCTCAAAGACTGCTAACAGAATTCACCACAAGGCAGGAGGCAACAAGCTGCTAGCGTATTCTTTAACAGCTTCTCCCCTGTTTTTGCTGCGTCTGCACAGTGGCATCGCTGCACTCGGCACGTGCGAGGGAAAGC] [+] EMBL CA591249 [CAGCTTAAAAGTATGTGTAATTTGTTGTATTTGTCTCACAAATGGCCTTAGCAGCCATTCCAGTCTATGTACACCTGACGACTGGTCTCTCTCTGAATGTATATGAATGGATCACTGACAGTATGCTGCCTCTGACACATTTTAGCTCCTTGTTTTCTAACTCCAGAAGAACACTGATATTTTGGGAAGCATTTAACCCACAACAGAGCTATGACATTCATTTTTGGCCTTTATTTTGATGAAATTGTGAGCGCTTGTGTTGTCTGATTTATTTACCTCACGCAGTTCTTATTTTGCATTGTAGTCAGTTAGATTTTTTTATGACCCTAAATAATGCAACTCAGTTCAGCTTTTACCAGAAACGGGTTCAGGGGTGTCAGACAGAGCCGTGTTGGACATTGCTTGCCTCAGGCTCACCCTTTTGTTAGTGCTACACACTTGTGTTTTACTGCTGTAAGTGTCTCAAAGACTGCTAACAGAATTCACCACAAGGCAGGAGGCAACAAGCTGCTAGCGTATTCTTTAACAGCTTCTCCCCTGTTTTTGCTGCGTCTGCACAGTGGCATCGCTGCACTCGGCACGTGCGAGGGAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6#0 ATTTAAATAAAAATAAAGAACAATAGCTTTAAAGATTAACCAGCCCTTTAGTTTCTTTGG 60 consensus_6#1 -----------------------CAGCTTAAAAGTATGTGTAA---TTTGTTGTATTTGT 34 ***** **** * * *** * * **** consensus_6#0 CTGAATAAAATTGGACTTCTGGCAGGTTTTTTAGACATTTCCCCTCTTATCCAAGAGGCT 120 consensus_6#1 CT---CACAAATGGCCT--TAGCAGCCATTCCAGTCTATGTACACCTGACGACTGGTCTC 89 ** * ** *** ** * **** ** ** * * * ** * * consensus_6#0 TGTTAGATAAGAGGAGAACGGAAGTTTACATGAATTCCAAAGATTCTCGTCTAATGAGAA 180 consensus_6#1 TCTCTGAATGTATATGAATGGA---TCACTGACAGTATGCTGCCTCTGACACATTTTAG- 145 * * ** * *** *** * ** * * * *** * * consensus_6#0 CATTCATTAACATATATCTTTAGTTATTAATTAAATTAAATGAAATTAATTAAAAGGGCT 240 consensus_6#1 --CTCCTTGTTTTCTAACTCCAGAAGAACACTGATATTTTGGGAAGCATTTAACCCACAA 203 ** ** * ** ** ** * * * * * ** * **** consensus_6#0 CAGACTCAAGTAGACTTTGTTTCTGTCTCAGGAATTTTCATGATGT-GTGCTGACATGTA 299 consensus_6#1 CAGAGCTA--TGACATTCATTTTTGGCCTTT--ATTTTGATGAAATTGTGAGCGCTTGTG 259 **** * * ** *** ** * ***** **** * *** * *** consensus_6#0 CTCCCAACCTTTTGCAGCTTAAAAGTATGTGTAATTTGTAATTTACACTGTTGTATTTGG 359 consensus_6#1 TTGTCTGATTTATTTACCTCACGCAGTTCT-TATTTTGCATTGTAGTCAGTTAGATTTTT 318 * * ** * * ** * * * ** **** * * ** * *** **** consensus_6#0 CTCGCAAATGGGCTTA-GCAGC-CATTCCAGTCTATGT---ACACCTGAAGACTGGTCTC 414 consensus_6#1 TTATGACCCTAAATAATGCAACTCAGTTCAGCTTTTACCAGAAACGGGTTCAGGGGTGTC 378 * * * * *** * ** * *** * * * ** * * *** ** consensus_6#0 TCTCTGAAT-GTATATGA-ATGGATCACCGACAGTAGTGTGCCTCTGACACATTCTANCT 472 consensus_6#1 AGACAGAGCCGTGTTGGACATTGCTTGCCT-CAGGCTCACCCTTTTGTTA-GTGCTACAC 436 * ** ** * ** ** * * ** *** * * ** * * *** consensus_6#0 CCTTGTTTGCTAAGTCCAGAAAAACACTCGAATCCCCGAA-AAAATTTAAAGCGGGGCAC 531 consensus_6#1 ACTTGTGTTTTACTGCTGTAAGTGTCTCAAAGACTGCTAACAGAATTCACCACAAGGCAG 496 ***** * ** * ** * * * ** * **** * * **** consensus_6#0 AGAGTAACGCCTGCATTCNTCNGCCGCACTCAGCAAGAAACACGGAGCAAGANAAGGGGC 591 consensus_6#1 GAGGCAAC------AAGCTGCTAGCGTATTCTTTAACAGCTTCTCCCCTGTTTTTGCTGC 550 * *** * * * ** * ** ** * * * * ** consensus_6#0 GCCCGCCAAAAAAGACAGGAGAGNCGAANNAAAAACCNACACGCAGCG 639 consensus_6#1 GTCTGC--ACAGTGGCATCGCTGCACTCGGCACGTGCGAGGGAAAGC- 595 * * ** * * * ** * * * * *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |