These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [GACGTTTAATAGCCTCCAGCACCACCACCAAACCCGGTGACCCAACGTGAAACTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACTACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGAGCCCACAGATGGTCCTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCAGTGAGCCTACAGATGGTACCGGTTTCACGACCACTCCTTCCAGGACCACGAACCACCCCAGTTTGTCCGCCACCTTGTCCTCGACTCAAGACAGTAATACAACCGCTGAACCCAGTCCAACCAGTAACGGAACTGTCCCTACGGCCAACACAGCTCTCCCTCTAACAGTGGTTGTGCCATCGGGGGGCTACGGATCAAACGACATGGTGGCGCTGGGTGCAACCCTGGGCGTCCTGCTGTGCGTCTGCCTGGCTATAATTGCCTTTCTCATCATCCATATTCGAAGGGACAGGGGGGACTGGAAGAAGCTCCATGAAATCAACCAGTTTAAAAG] [+] EMBL CA588106 [GACGTTTAATAGCCTCCAGCACCACCACCAAACCCGGTGACCCAACGTGAAACTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACTACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGAGCCCACAGATGGTCCTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCAGTGAGCCTACAGATGGTACCGGTTTCACGACCACTCCTTCCAGGACCACGAACCACCCCAGTTTGTCCGCCACCTTGTCCTCGACTCAAGACAGTAATACAACCGCTGAACCCAGTCCAACCAGTAACGGAACTGTCCCTACGGCCAACACAGCTCTCCCTCTAACAGTGGTTGTGCCATCGGGGGGCTACGGATCAAACGACATGGTGGCGCTGGGTGCAACCCTGGGCGTCCTGCTGTGCGTCTGCCTGGCTATAATTGCCTTTCTCATCATCCATATTCGAAGGGACAGGGGGGACTGGAAGAAGCTCCATGAAATCAACCAGTTTAAAAG] consensusID : consensus_643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [AAATCAGTTTCCGAAAACCACCACTGTTCCACCGGGGACCACAAAATACAAGACCACAGATCACGTTTCCCCAACCAGCCCCAGTAGTTCCACGGACGTCACCGGCTTAACGACTACCCCGTCAGAGACCACCACCAAACCCGGTGACCGCACAGGTGGTCCTGGTTTGACAACTACTCCCTCCAGCACCACCACCGAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCTCTCCAG] [+] EMBL FR0059628 [AAATCAGTTTCCGAAAACCACCACTGTTCCACCGGGGACCACAAAATACAAGACCACAGATCACGTTTCCCCAACCAGCCCCAGTAGTTCCACGGACGTCACCGGCTTAACGACTACCCCGTCAGAGACCACCACCAAACCCGGTGACCGCACAGGTGGTCCTGGTTTGACAACTACTCCCTCCAGCACCACCACCGAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCTCTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_643#0 GACGTTTAATAGCCTCC-AGCACCACCACCAAACCCGGTGACCCAACGTGAAACTGGTTT 59 consensus_643#1 -----AAATCAGTTTCCGAAAACCACCACTGTTCCACCGGGGACCACAAAATACAAGACC 55 * ** *** * ******** ** * * ** * ** * consensus_643#0 GACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTT 119 consensus_643#1 ACAGATCACGTTTCCC-------CAACCAGCCCCAGTAGTTCCACGGACGTCACCGGCTT 108 ** ** ** * **** *** ** **** * * * ** ** consensus_643#0 GACTACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTT 179 consensus_643#1 AACGACTACCCCGTCAGAGACCACCACCAAACCCGGTGACCGCACAGGTGGTCCTGGTTT 168 ** ***** ** ** ********************** ****************** consensus_643#0 GACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGAGCCCACAGATGGTCCTGGTTT 239 consensus_643#1 GACAACTACTCCCTCCAGCACCACCACCGAACCCGGTGACCCCACAGGTGGTCCTGGTTT 228 *** ************************ ********** ******* ************ consensus_643#0 GACGACTACTCCCTCCAGCACCACCACCAAACCCAGTGAGCCTACAGATGGTACCGGTTT 299 consensus_643#1 GACGACTACTCTCTCCAG------------------------------------------ 246 *********** ****** consensus_643#0 CACGACCACTCCTTCCAGGACCACGAACCACCCCAGTTTGTCCGCCACCTTGTCCTCGAC 359 consensus_643#1 ------------------------------------------------------------ consensus_643#0 TCAAGACAGTAATACAACCGCTGAACCCAGTCCAACCAGTAACGGAACTGTCCCTACGGC 419 consensus_643#1 ------------------------------------------------------------ consensus_643#0 CAACACAGCTCTCCCTCTAACAGTGGTTGTGCCATCGGGGGGCTACGGATCAAACGACAT 479 consensus_643#1 ------------------------------------------------------------ consensus_643#0 GGTGGCGCTGGGTGCAACCCTGGGCGTCCTGCTGTGCGTCTGCCTGGCTATAATTGCCTT 539 consensus_643#1 ------------------------------------------------------------ consensus_643#0 TCTCATCATCCATATTCGAAGGGACAGGGGGGACTGGAAGAAGCTCCATGAAATCAACCA 599 consensus_643#1 ------------------------------------------------------------ consensus_643#0 GTTTAAAAG 608 consensus_643#1 --------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |