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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence
[GTCGCTCAAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTCTCTTGCATGGCTGTGAAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTCCCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGAAAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGGTTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGCTTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGCCACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCACATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGTTCTTTCAGGTTTCATCCATGTTTCAGGTGGCCTCAAGTGTTCTGGAGGAATGCGTACAGTCTCAATCACAAGAGCAGCTCAAACTCCTGCTGCATTATCAGAAAGATCACAGTCACCTGGATCACAATGAGGGCTCCATGGAAGGTGCTTTTATTACTTCTGCTCTAAAACTCTGCTGTGCAACAGGAGCGGTGATGGATAAAGCCCATCCTCATAGCAATATTCAGGATGTATCATGTCGATATCATTCGGATTGTGAAAATCTACCACTGA]
[+] EMBL CA588199 [GTCGCTCAAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTCTCTTGCATGGCTGTGAAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTCCCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGAAAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGGTTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGCTTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGCCACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCACATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGTTCTTTCAGGTTTCATCCATGTTTCAGGTGGCCTCAAGTGTTCTGGAGGAATGCGTACAGTCTCAATCACAAGAGCAGCTCAAACTCCTGCTGCATTATCAGAAAGATCACAGTCACCTGGATCACAATGAGGGCTCCATGGAAGGTGCTTTTATTACTTCTGCTCTAAAACTCTGCTGTGCAACAGGAGCGGTGATGGATAAAGCCCATCCTCATAGCAATATTCAGGATGTATCATGTCGATATCATTCGGATTGTGAAAATCTACCACTGA]
consensusID : consensus_650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[AGCAGCACTAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTGAAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTCCCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGAAAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGGTTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGCTTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGCCACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCACATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGTTCTTTCAGAAAGATTTCCCAGAAGACTTTGGCCCCACATATGATAAAGCTTTACTCATCTTGATATGGACA]
[+] EMBL CA590062 [AGCAGCACTAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTGAAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTCCCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGAAAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGGTTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGCTTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGCCACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCACATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGTTCTTTCAGAAAGATTTCCCAGAAGACTTTGGCCCCACATATGATAAAGCTTTACTCATCTTGATATGGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_650#0 -GTCGCTCAAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTCTCTTGCATGGCTGTG 59
consensus_650#1 AGCAGCACTAGCAATTGTACTGTAATTTTTATTATCGTGGCTGT---------------G 45
* ** * *********************************** *
consensus_650#0 AAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTC 119
consensus_650#1 AAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTC 105
************************************************************
consensus_650#0 CCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGA 179
consensus_650#1 CCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGA 165
************************************************************
consensus_650#0 AAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGG 239
consensus_650#1 AAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGG 225
************************************************************
consensus_650#0 TTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGC 299
consensus_650#1 TTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGC 285
************************************************************
consensus_650#0 TTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGC 359
consensus_650#1 TTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGC 345
************************************************************
consensus_650#0 CACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCAC 419
consensus_650#1 CACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCAC 405
************************************************************
consensus_650#0 ATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGT 479
consensus_650#1 ATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGT 465
************************************************************
consensus_650#0 TCTTTCAGGTTTCATCCATGTTTCAGGTGGCCTCAAGTGTTCTGGAGGAATGCGTACAGT 539
consensus_650#1 TCTTTCAG-----AAAGATTTCCCAGAAGACTTTGGCCCCACATATGATAAAGCTTTACT 520
******** * ** * *** * * * * * * * * *
consensus_650#0 CTCAATCACAAGAGCAGCTCAAACTCCTGCTGCATTATCAGAAAGATCACAGTCACCTGG 599
consensus_650#1 CATCTTGATATGGACA-------------------------------------------- 536
* * * * * **
consensus_650#0 ATCACAATGAGGGCTCCATGGAAGGTGCTTTTATTACTTCTGCTCTAAAACTCTGCTGTG 659
consensus_650#1 ------------------------------------------------------------
consensus_650#0 CAACAGGAGCGGTGATGGATAAAGCCCATCCTCATAGCAATATTCAGGATGTATCATGTC 719
consensus_650#1 ------------------------------------------------------------
consensus_650#0 GATATCATTCGGATTGTGAAAATCTACCACTGA 752
consensus_650#1 ---------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |