These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [CTTTGATAGCGCTCGCTACCGATTACATTAAAAAAAAAAATTCTTTAAATGTGTCTGTGCCTTTTCACCAGCATGAATTCGTTAACCGCCAAGGAAGCCGAGAAGATCTGTGTTCTGTTTTGTCAGGAAGTCGAAGTCTTCGCTGTGGGAAAATGCGACCATCCCGTTTGCTACCGCTGCTCGACAAAAATGAGAGTTCTCTGCGACCAGAAGTACTGCGCCGTCTGCCGCGAGGAGCTCGACAAGGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTTCGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGGTATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGACGAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAATCACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCACCGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGTGACGACCGCTATCTTGACAATGACGAGCTGCTTAAACACTTGCGCAGGGACCACTACTTCTGCCACTTCTGCGATGCAAATGGCTCTCAGGAATACTACCGTGATTATCAGTACCTCACTGAGCACTTCAGGGACCGTCACTATCTGCGCGAGGAA] [+] EMBL CA588356 [CTTTGATAGCGCTCGCTACCGATTACATTAAAAAAAAAAATTCTTTAAATGTGTCTGTGCCTTTTCACCAGCATGAATTCGTTAACCGCCAAGGAAGCCGAGAAGATCTGTGTTCTGTTTTGTCAGGAAGTCGAAGTCTTCGCTGTGGGAAAATGCGACCATCCCGTTTGCTACCGCTGCTCGACAAAAATGAGAGTTCTCTGCGACCAGAAGTACTGCGCCGTCTGCCGCGAGGAGCTCGACAAGGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTTCGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGGTATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGACGAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAATCACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCACCGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGTGACGACCGCTATCTTGACAATGACGAGCTGCTTAAACACTTGCGCAGGGACCACTACTTCTGCCACTTCTGCGATGCAAATGGCTCTCAGGAATACTACCGTGATTATCAGTACCTCACTGAGCACTTCAGGGACCGTCACTATCTGCGCGAGGAA] consensusID : consensus_666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [ATGTTGGCTATCCCTTCCCATACTCGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTTCGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGGTATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGACGAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAATCACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCACCGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGCGACGACCG] [+] EMBL FR0060488 [ATGTTGGCTATCCCTTCCCATACTCGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTTCGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGGTATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGACGAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAATCACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCACCGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGCGACGACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_666#0 CTTTGATAGCGCTCGCTACCGATTACATTAAAAAAAAAAATTCTTTAAATGTGTCTGTGC 60 consensus_666#1 ------------------------------------------------------------ consensus_666#0 CTTTTCACCAGCATGAATTCGTTAACCGCCAAGGAAGCCGAGAAGATCTGTGTTCTGTTT 120 consensus_666#1 ------------------------------------------------------------ consensus_666#0 TGTCAGGAAGTCGAAGTCTTCGCTGTGGGAAAATGCGACCATCCCGTTTGCTACCGCTGC 180 consensus_666#1 ------------------------------------------------------------ consensus_666#0 TCGACAAAAATGAGAGTTCTCTGCGACCAGAAGTACTGCGCCGTCTGCCGCGAGGAGCTC 240 consensus_666#1 -------------------------------------ATGTTGGCTATCCCT----TCCC 19 * * ** * * * * consensus_666#0 GACAAGGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTT 300 consensus_666#1 ATACTCGTGGTGTTTGTGGAAAAGCTCCAGCCATTCTCAAGACTGCCACCGCAGCAGTTT 79 ****************************************************** consensus_666#0 CGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGG 360 consensus_666#1 CGCTGTGAGAAGAAGTACGACATCTATTTTAGCGATGAGAACATCTATGCCAAGTACAGG 139 ************************************************************ consensus_666#0 TATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGAC 420 consensus_666#1 TATCTACTATCACCGGTATGCCGCTATTGTCCAGAGCCTAAAGTCTTTTCCAAGTTTGAC 199 ************************************************************ consensus_666#0 GAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAAT 480 consensus_666#1 GAGCTTGAACACCATATGAGGAAACAGCACGAGGTTTTCTCTTGCAAGCTCTGTGCAAAT 259 ************************************************************ consensus_666#0 CACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCAC 540 consensus_666#1 CACCTGAAGGTCTTCTGTCACGAGCGAAAATGGTATAACCGCAAGGAACTGGCACAGCAC 319 ************************************************************ consensus_666#0 CGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGT 600 consensus_666#1 CGGGCACACGGGGACCCAGATGACACCAGCCACAGAGGACACCCCCTCTGCAAATTTTGC 379 *********************************************************** consensus_666#0 GACGACCGCTATCTTGACAATGACGAGCTGCTTAAACACTTGCGCAGGGACCACTACTTC 660 consensus_666#1 GACGACCG---------------------------------------------------- 387 ******** consensus_666#0 TGCCACTTCTGCGATGCAAATGGCTCTCAGGAATACTACCGTGATTATCAGTACCTCACT 720 consensus_666#1 ------------------------------------------------------------ consensus_666#0 GAGCACTTCAGGGACCGTCACTATCTGCGCGAGGAA 756 consensus_666#1 ------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |