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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_67#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[ACCGACAGACAGATCAGCGAAGGAAGGTTCGGGGGATCTTTGCAGATGTAAACGTCCATAACTGGTAATCGAAGGCCAGTTAGGATCATAGTAATCCCATCCCGGGTGTCGCCCAGTGAGTAAATTTAACTTGGATTCTGCGAAAACGCCACAAGTCCAGCAGCAAAATGACAGCTGCAAGAGAAATGCGTTCATGATGCTAATTCATGCCGATCAGGATCGAGCTCTGGATTACCTCAGCACGTGTATCGACCAAGTTCACACTTTCGGGGACATTCTCCAGCTGGTCATTGTGGAGCTGATTTACAAAGTTTGCCATGCTAACCCCTCTGAACGGGCCCGCTTTATCCGATGCATCTACAACCTGTTGCAGTCCTCCAGCCCAGCGGTTAAATACGAAGCTGCGGGCACTCTTGTAACCCTGTCCAGTGCTCCCACAGCCATCAAGGCTGCAGCCCAGTGCTACATTGATTTGATCATCAAGGAGAGCGACAACAACGTGAGGCTGATCGTTCTCGACCGCCTGATAGAACTCAAGGAGCATCCCACTCATGAGCGTGTTCTCCAGGACCTGGTCATGGACATTCTGCGCGTGCTCAGCACCCCGGACCTCGAAGTAAGAAAGAAGACCTTG]
[+] EMBL BU808594 [ACCGACAGACAGATCAGCGAAGGAAGGTTCGGGGGATCTTTGCAGATGTAAACGTCCATAACTGGTAATCGAAGGCCAGTTAGGATCATAGTAATCCCATCCCGGGTGTCGCCCAGTGAGTAAATTTAACTTGGATTCTGCGAAAACGCCACAAGTCCAGCAGCAAAATGACAGCTGCAAGAGAAATGCGTTCATGATGCTAATTCATGCCGATCAGGATCGAGCTCTGGATTACCTCAGCACGTGTATCGACCAAGTTCACACTTTCGGGGACATTCTCCAGCTGGTCATTGTGGAGCTGATTTACAAAGTTTGCCATGCTAACCCCTCTGAACGGGCCCGCTTTATCCGATGCATCTACAACCTGTTGCAGTCCTCCAGCCCAGCGGTTAAATACGAAGCTGCGGGCACTCTTGTAACCCTGTCCAGTGCTCCCACAGCCATCAAGGCTGCAGCCCAGTGCTACATTGATTTGATCATCAAGGAGAGCGACAACAACGTGAGGCTGATCGTTCTCGACCGCCTGATAGAACTCAAGGAGCATCCCACTCATGAGCGTGTTCTCCAGGACCTGGTCATGGACATTCTGCGCGTGCTCAGCACCCCGGACCTCGAAGTAAGAAAGAAGACCTTG]
consensusID : consensus_67#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[AAGGCCAGTTAGGATCATAGTAATCCCATGGCCGGTGTCGCCCAGTGAGTAAATTTAACTTGGATTCTGCGAAAACGGCACAAGTCCAGCAGCAAAATGACAGCTGCAGAGAACGTTTGTTACACTCTGATCAATGTTACATCTGATTCAGAGCCTCCTTCCGAAGTCAGCCTGAAAACTGACTTGGAAAAGGGGGAAATCAAGGCAAAAACCGAAGCCCTGAAGAAGGTCATCATCATGATCCTAAATGGTGAAAAGTTGCCAGGGCTGCTGATGACCATAATTCGCTTCGTGCTGCCACTTCAGGACCACACCATCAAAAAGCTGCTGCTGGTTTCTGGGAGATTGTCCCCAAAACAACAACTGATGGTAAACTCCTTCAGGAGATGATCCTGGTCTGTGATGCCTACAGAAAGGACCTTCAGCATCCCAATGAGTTCATCCGT]
[+] EMBL FR0061085 [AAGGCCAGTTAGGATCATAGTAATCCCATGGCCGGTGTCGCCCAGTGAGTAAATTTAACTTGGATTCTGCGAAAACGGCACAAGTCCAGCAGCAAAATGACAGCTGCAGAGAACGTTTGTTACACTCTGATCAATGTTACATCTGATTCAGAGCCTCCTTCCGAAGTCAGCCTGAAAACTGACTTGGAAAAGGGGGAAATCAAGGCAAAAACCGAAGCCCTGAAGAAGGTCATCATCATGATCCTAAATGGTGAAAAGTTGCCAGGGCTGCTGATGACCATAATTCGCTTCGTGCTGCCACTTCAGGACCACACCATCAAAAAGCTGCTGCTGGTTTCTGGGAGATTGTCCCCAAAACAACAACTGATGGTAAACTCCTTCAGGAGATGATCCTGGTCTGTGATGCCTACAGAAAGGACCTTCAGCATCCCAATGAGTTCATCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_67#0 ACCGACAGACAGATCAGCGAAGGAAGGTTCGGGGGATCTTTGCAGATGTAAACGTCCATA 60
consensus_67#1 ------------------------------------------------------------
consensus_67#0 ACTGGTAATCGAAGGCCAGTTAGGATCATAGTAATCCCATCCCGGGTGTCGCCCAGTGAG 120
consensus_67#1 -----------AAGGCCAGTTAGGATCATAGTAATCCCATGGCCGGTGTCGCCCAGTGAG 49
***************************** * ****************
consensus_67#0 TAAATTTAACTTGGATTCTGCGAAAACGCCACAAGTCCAGCAGCAAAATGACAGCTGCAA 180
consensus_67#1 TAAATTTAACTTGGATTCTGCGAAAACGGCACAAGTCCAGCAGCAAAATGACAGCTGCAG 109
**************************** ******************************
consensus_67#0 GAGAAATGCGTTCATGATGCTAATTCATGCCG-ATCAGGATCGAGCTCTGGATTACCTCA 239
consensus_67#1 AGAACGTTTGTTAC--ACTCTGATCAATGTTACATCTGATTCAGAGCCTC--CTTCCGAA 165
* * *** * ** ** *** *** * ** ** * ** *
consensus_67#0 GCACGTGTATCGACCAAGTTCACACTTTCGGGGAC--ATTCTCCAGCTG--GTCATTGTG 295
consensus_67#1 GTCAGCCTGAAAACTGACTTGGAAAAGGGGGAAATCAAGGCAAAAACCGAAGCCCTGAAG 225
* * * ** * ** * ** * * * * * * * * * *
consensus_67#0 GAGCTGATTTACAAAGTTTGCCATGCTAACCCCTCTGAACGGGCCCGCTTTATCCGATGC 355
consensus_67#1 AAGGTCATCATCATGATCCTAAATGGTGAAAAGTT--GCCAGGGCTGCTGATGACCATA- 282
** * ** ** * *** * * * * ** * *** * **
consensus_67#0 ATCTACAACCTGTTGCAGTCCTCCAGCCCAGCGGTTAAATACGAAGCTGCGGGCACTCTT 415
consensus_67#1 ATTCGCTTCGTGCTGCCACTTCAGGACCACACCATCAAAAA-GCTGCTGCTGGTTTCTGG 341
** * * ** *** ** * * *** * * ***** **
consensus_67#0 GTAACCCTGTCCAGTGCTCCCACAGCCATCAAGGCTGCAGCCCAGTGCTACATTGATTTG 475
consensus_67#1 GAGATTGTCCCCAAAACAACAACTGATGGTAAA-CTCCTTCAGGAGATGATCCTGGTCTG 400
* * * *** * * ** * ** ** * * * ** * **
consensus_67#0 --ATCATCAAGGAGAGCGACAACAACGTGAGGCTGATCGTTCTCGACCGCCTGATAGAAC 533
consensus_67#1 TGATGCCTACAGAAAGGACCTTCAGCAT----CCCAATGAGTTCATCCGT---------- 446
** * ** ** * ** * * * * * ** ***
consensus_67#0 TCAAGGAGCATCCCACTCATGAGCGTGTTCTCCAGGACCTGGTCATGGACATTCTGCGCG 593
consensus_67#1 ------------------------------------------------------------
consensus_67#0 TGCTCAGCACCCCGGACCTCGAAGTAAGAAAGAAGACCTTG 634
consensus_67#1 -----------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |