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Takifugu rubripes
cluster # 670 cluster # 670       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_670#0 length = 634 sequences # 1  
 consensus_670#1 length = 466 sequences # 1  
consensusID : consensus_670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence 
                              [TTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTTCAACGTCGGAGAGGACTGTCCTGTGTTTGACGGCCTGTTTGAATTCTGCCAACTTTCTGCTGGAGGATCTGCTGCTGGCTCAGTGAAGTTAAACAGACAGCAGACCGACATCGCCGTCAACTGGGCTGGAGGACTTCACCATGCAAAGAAGTCGGAGGCTTCTGGCTTCTGCTACGTCAACGATATTGTCCTGGCCATCTTGGAGCTGCTCAAGAGGGTGCTGGAGCTTATCCCAGCTGCATGTGAGCTTGGGCCCGTGTGAGCATTTGAGGGTGCAGGACGTTGCTCAAGGGTACCT]

[+] EMBL CA588372             [TTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTTCAACGTCGGAGAGGACTGTCCTGTGTTTGACGGCCTGTTTGAATTCTGCCAACTTTCTGCTGGAGGATCTGCTGCTGGCTCAGTGAAGTTAAACAGACAGCAGACCGACATCGCCGTCAACTGGGCTGGAGGACTTCACCATGCAAAGAAGTCGGAGGCTTCTGGCTTCTGCTACGTCAACGATATTGTCCTGGCCATCTTGGAGCTGCTCAAGAGGGTGCTGGAGCTTATCCCAGCTGCATGTGAGCTTGGGCCCGTGTGAGCATTTGAGGGTGCAGGACGTTGCTCAAGGGTACCT]




>consensus_670#0
TTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACAC
GACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTA
TTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCT
TCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGA
GGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGA
CAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTTCAACGTCGGAGAGGACTGTCCTGT
GTTTGACGGCCTGTTTGAATTCTGCCAACTTTCTGCTGGAGGATCTGCTGCTGGCTCAGT
GAAGTTAAACAGACAGCAGACCGACATCGCCGTCAACTGGGCTGGAGGACTTCACCATGC
AAAGAAGTCGGAGGCTTCTGGCTTCTGCTACGTCAACGATATTGTCCTGGCCATCTTGGA
GCTGCTCAAGAGGGTGCTGGAGCTTATCCCAGCTGCATGTGAGCTTGGGCCCGTGTGAGC
ATTTGAGGGTGCAGGACGTTGCTCAAGGGTACCT

consensusID : consensus_670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence 
                              [CTTGTGTTATTTTTCAGACTCATTCTGTTTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTGTAAGGTCCATCTCAGCCTGGCGGACAGTAGCCCATGTTTTCTTCCAGCTGTCTCATATTCAACATTATAAACTGTCTTTGGGTTTCTCCCTGTAATATCTTC]

[+] EMBL FR0056186            [CTTGTGTTATTTTTCAGACTCATTCTGTTTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTGTAAGGTCCATCTCAGCCTGGCGGACAGTAGCCCATGTTTTCTTCCAGCTGTCTCATATTCAACATTATAAACTGTCTTTGGGTTTCTCCCTGTAATATCTTC]




>consensus_670#1
CTTGTGTTATTTTTCAGACTCATTCTGTTTACATTACGCTCGTTTAAATCGAGTTGTATC
CGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCT
ATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCAC
ATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAA
TCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACA
TCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGC
GCTGTAAGGTCCATCTCAGCCTGGCGGACAGTAGCCCATGTTTTCTTCCAGCTGTCTCAT
ATTCAACATTATAAACTGTCTTTGGGTTTCTCCCTGTAATATCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_670#0      ----------------------------TTACATTACGCTCGTTTAAATCGAGTTGTATC 32
consensus_670#1      CTTGTGTTATTTTTCAGACTCATTCTGTTTACATTACGCTCGTTTAAATCGAGTTGTATC 60
                                                 ********************************

consensus_670#0      CGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCT 92
consensus_670#1      CGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCT 120
                     ************************************************************

consensus_670#0      ATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCAC 152
consensus_670#1      ATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCAC 180
                     ************************************************************

consensus_670#0      ATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAA 212
consensus_670#1      ATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAA 240
                     ************************************************************

consensus_670#0      TCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACA 272
consensus_670#1      TCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACA 300
                     ************************************************************

consensus_670#0      TCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGC 332
consensus_670#1      TCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGC 360
                     ************************************************************

consensus_670#0      GCTTCAACGTCGGAGAGGACTGTCCTGTGTTTGACGGCCTGTTTGAATTCTGCCAACTTT 392
consensus_670#1      GCTGTAAGGTC---CATCTCAGCCTGGCGGACAGTAGCCCATGT--TTTCTTCCAGCTGT 415
                     ***  ** ***    *   * * *  * *       ***  * *   **** *** ** *

consensus_670#0      CTGCTGGAGGATCTGCTGCTGGCTCAGTGAAGTTAAACAGACAGCAGACCGACATCGCCG 452
consensus_670#1      CTCATATTCAACATTATAAACTGTCTTTGGGTTTCTCCCTGTAATATCTTC--------- 466
                     **  *     *  *  *      **  **   **   *    *  *              

consensus_670#0      TCAACTGGGCTGGAGGACTTCACCATGCAAAGAAGTCGGAGGCTTCTGGCTTCTGCTACG 512
consensus_670#1      ------------------------------------------------------------
                                                                                 

consensus_670#0      TCAACGATATTGTCCTGGCCATCTTGGAGCTGCTCAAGAGGGTGCTGGAGCTTATCCCAG 572
consensus_670#1      ------------------------------------------------------------
                                                                                 

consensus_670#0      CTGCATGTGAGCTTGGGCCCGTGTGAGCATTTGAGGGTGCAGGACGTTGCTCAAGGGTAC 632
consensus_670#1      ------------------------------------------------------------
                                                                                 

consensus_670#0      CT 634
consensus_670#1      --


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)