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Takifugu rubripes
cluster # 7 cluster # 7       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7#0 length = 634 sequences # 1  
consensus_7#1 length = 619 sequences # 1  

consensusID : consensus_7#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence
                              [ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTTCACAGAGAAAAAATGTCATCATTCTGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAACAGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACGTGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATCCAGGATGGCAGCTTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGGCGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCAGCTGCTAACCTCAGCCAGCAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGCGTCCCGAGCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTGTCCACATA]

[+] EMBL BU807879             [ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTTCACAGAGAAAAAATGTCATCATTCTGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAACAGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACGTGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATCCAGGATGGCAGCTTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGGCGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCAGCTGCTAACCTCAGCCAGCAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGCGTCCCGAGCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTGTCCACATA]


>consensus_7#0 ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCA AAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTC CTACATCTTCAAGTACATCATCATCGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCA TCAGTTCACAGAGAAAAAATGTCATCATTCTGATTGGAAACAAGGCCGACCTGGAGGCCC AGAGAGACGTAACTTACGAGGAGGCCAAACAGTTCGCTGAGGAGAACGGTTTACTGTTTC TAGAGGCCAGCGCTAAAACAGGAGAAAACGTGGAAGAAGCCTTCCTGGAAGCAGCAAAGA GGATCTATCAGAACATCCAGGATGGCAGCTTAGACCTGAATGCTGCAGAGTCGGGAGTCC AGCACAAACCATCGGCACCTCAGGGGGGGCGACTCAATGCTGACAACCAAGCACCCAAAG AGGGTTGCAGCTGCTAACCTCAGCCAGCAGCTCCAGATCAGCCCAGATGAAGGACTCAGA CAAATGCAGAGAACTCAGCGTCCCGAGCGCTCCAAAGCTCTCAGACCATATAAATGTAAA CATTTGCAGACCTCAGAGGTCAAGTGTCCACATA



consensusID : consensus_7#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence
                              [CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACAAACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTGTTCACGAAGGAAGAGCAGAACTGTCTCTTAGTGTAAGGCACCGCCCCGCGACCACAAGTGACACATAACAAACACACCCTCGAGTTCGTCGATACGATGTGAGACAACGAAGAAATGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAAATGGACTAGTTACACAGAGACAGAAGGTATAAATGGACTGATTATACTGGGACATAGGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAGACAGTTGGGAGTGTTTGTGTTGACTCTGATCTCTGCTCACCTGTCCAGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT]

[+] EMBL CA590786             [CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACAAACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTGTTCACGAAGGAAGAGCAGAACTGTCTCTTAGTGTAAGGCACCGCCCCGCGACCACAAGTGACACATAACAAACACACCCTCGAGTTCGTCGATACGATGTGAGACAACGAAGAAATGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAAATGGACTAGTTACACAGAGACAGAAGGTATAAATGGACTGATTATACTGGGACATAGGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAGACAGTTGGGAGTGTTTGTGTTGACTCTGATCTCTGCTCACCTGTCCAGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT]


>consensus_7#1 CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTT CGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAAT GACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACA AACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTG TTCACGAAGGAAGAGCAGAACTGTCTCTTAGTGTAAGGCACCGCCCCGCGACCACAAGTG ACACATAACAAACACACCCTCGAGTTCGTCGATACGATGTGAGACAACGAAGAAATGGAC GGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAAATGGA CTAGTTACACAGAGACAGAAGGTATAAATGGACTGATTATACTGGGACATAGGGATCAAA TCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAGACAGTTGGG AGTGTTTGTGTTGACTCTGATCTCTGCTCACCTGTCCAGGGGACATGGGAGTGGGGAAAT CCTGTCTGCTCCATCAGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7#0      ------------------------ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTT 36
consensus_7#1      CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTT 60
                                           ************************************

consensus_7#0      CGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAAT 96
consensus_7#1      CGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAAT 120
                   ************************************************************

consensus_7#0      GACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGG 156
consensus_7#1      GACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACA 180
                   *************************************************** **      

consensus_7#0      AGTGGGGAAATCCTGTCTGCTCCATCA------GTTCACAGAGAAAAAATGTCATCATTC 210
consensus_7#1      AACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTG 240
                   *     * ** *           ** *      *       *  **  **** * *  * 

consensus_7#0      TGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAAC 270
consensus_7#1      TTCACGAAGGAAGAGCAGAACTGTCT-CTTAGTGTAAGGCACCGCCCCGCGACCACAAGT 299
                   *    * *   *  ** ** ***    *  ** *  * * * *   *   **   ***  

consensus_7#0      AGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACG 330
consensus_7#1      GACACA-TAACAAACACACCCTCGAGTTCGTCGATACGAT--GTGAGACAAC-GAAGAAA 355
                       *  * *  *  **    *   ***  * **  * *    * * ***   *** *  

consensus_7#0      TGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATC-CAGGATGGCAGC 389
consensus_7#1      TGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAA 415
                   **** *     * *  ***   **  ** * **   ** * *      ***   **    

consensus_7#0      TTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGG 449
consensus_7#1      ATGGACT--AGTTACACAGAGACAGAAGGTATAAATGGACTGATTATAC--TGGGACATA 471
                    * ***   * *    ***** * * **      *   **       **    **     

consensus_7#0      CGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCA--GCTGCTAACCTCAGCCAG 507
consensus_7#1      GGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAG 531
                    *  ****  *  ****    *        ***   * **  * * **    * *   **

consensus_7#0      CAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGC-GTCCCGA 566
consensus_7#1      ACAGTTGGGAGTGTTTGTGTTGA----CTCTGATCTCTGC-------TCACCTGTCCAGG 580
                       *   **        * ***    *** **    ***       *** * **** * 

consensus_7#0      GCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTG 626
consensus_7#1      GGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT--------------------- 619
                   *  *     **     * * * * *       * ** **                     

consensus_7#0      TCCACATA 634
consensus_7#1      --------
                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)