These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTTCACAGAGAAAAAATGTCATCATTCTGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAACAGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACGTGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATCCAGGATGGCAGCTTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGGCGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCAGCTGCTAACCTCAGCCAGCAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGCGTCCCGAGCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTGTCCACATA] [+] EMBL BU807879 [ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTTCACAGAGAAAAAATGTCATCATTCTGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAACAGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACGTGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATCCAGGATGGCAGCTTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGGCGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCAGCTGCTAACCTCAGCCAGCAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGCGTCCCGAGCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTGTCCACATA] consensusID : consensus_7#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACAAACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTGTTCACGAAGGAAGAGCAGAACTGTCTCTTAGTGTAAGGCACCGCCCCGCGACCACAAGTGACACATAACAAACACACCCTCGAGTTCGTCGATACGATGTGAGACAACGAAGAAATGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAAATGGACTAGTTACACAGAGACAGAAGGTATAAATGGACTGATTATACTGGGACATAGGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAGACAGTTGGGAGTGTTTGTGTTGACTCTGATCTCTGCTCACCTGTCCAGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT] [+] EMBL CA590786 [CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTTCGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAATGACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACAAACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTGTTCACGAAGGAAGAGCAGAACTGTCTCTTAGTGTAAGGCACCGCCCCGCGACCACAAGTGACACATAACAAACACACCCTCGAGTTCGTCGATACGATGTGAGACAACGAAGAAATGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAAATGGACTAGTTACACAGAGACAGAAGGTATAAATGGACTGATTATACTGGGACATAGGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAGACAGTTGGGAGTGTTTGTGTTGACTCTGATCTCTGCTCACCTGTCCAGGGGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7#0 ------------------------ATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTT 36 consensus_7#1 CGGAAGAGGAGAGAGATTTCCTGGATGCTCGCTGGGCTAACTAACCAACAATCAGCCCTT 60 ************************************ consensus_7#0 CGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAAT 96 consensus_7#1 CGATCTACATTGAAACCTGATTCAAAGGTCGAATAAGCACTATTACCGAAGTGCCAAAAT 120 ************************************************************ consensus_7#0 GACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGGGACATGGG 156 consensus_7#1 GACAGCCGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATCGGTGAGTGACA 180 *************************************************** ** consensus_7#0 AGTGGGGAAATCCTGTCTGCTCCATCA------GTTCACAGAGAAAAAATGTCATCATTC 210 consensus_7#1 AACACAGGAACCGAAATAAGGAAATGACATGCTGCATGTTAAATAATTATGTGAGCGCTG 240 * * ** * ** * * * ** **** * * * consensus_7#0 TGATTGGAAACAAGGCCGACCTGGAGGCCCAGAGAGACGTAACTTACGAGGAGGCCAAAC 270 consensus_7#1 TTCACGAAGGAAGAGCAGAACTGTCT-CTTAGTGTAAGGCACCGCCCCGCGACCACAAGT 299 * * * * ** ** *** * ** * * * * * * ** *** consensus_7#0 AGTTCGCTGAGGAGAACGGTTTACTGTTTCTAGAGGCCAGCGCTAAAACAGGAGAAAACG 330 consensus_7#1 GACACA-TAACAAACACACCCTCGAGTTCGTCGATACGAT--GTGAGACAAC-GAAGAAA 355 * * * * ** * *** * ** * * * * *** *** * consensus_7#0 TGGAAGAAGCCTTCCTGGAAGCAGCAAAGAGGATCTATCAGAACATC-CAGGATGGCAGC 389 consensus_7#1 TGGACGGGTTATACTGGGACAGAGACAAAATGACTGATTATATTGGAACAGAGAGGATAA 415 **** * * * *** ** ** * ** ** * * *** ** consensus_7#0 TTAGACCTGAATGCTGCAGAGTCGGGAGTCCAGCACAAACCATCGGCACCTCAGGGGGGG 449 consensus_7#1 ATGGACT--AGTTACACAGAGACAGAAGGTATAAATGGACTGATTATAC--TGGGACATA 471 * *** * * ***** * * ** * ** ** ** consensus_7#0 CGACTCAATGCTGACAACCAAGCACCCAAAGAGGGTTGCA--GCTGCTAACCTCAGCCAG 507 consensus_7#1 GGGATCAAATCAAACAAGTTGGACATTTTGGAGTACTACAAAGTTACTGGTTTAATGGAG 531 * **** * **** * *** * ** * * ** * * ** consensus_7#0 CAGCTCCAGATCAGCCCAGATGAAGGACTCAGACAAATGCAGAGAACTCAGC-GTCCCGA 566 consensus_7#1 ACAGTTGGGAGTGTTTGTGTTGA----CTCTGATCTCTGC-------TCACCTGTCCAGG 580 * ** * *** *** ** *** *** * **** * consensus_7#0 GCGCTCCAAAGCTCTCAGACCATATAAATGTAAACATTTGCAGACCTCAGAGGTCAAGTG 626 consensus_7#1 GGACATGGGAGTGGGGAAATCCTGTCTGCTCCATCAGTT--------------------- 619 * * ** * * * * * * ** ** consensus_7#0 TCCACATA 634 consensus_7#1 -------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |