These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence [TCCTCAAAGTAGCTCCTCTGTGTCGGGGCTCCTCAGCAGCACCCTTCAGGAGCCAGAGATCTTAGCTGTGTCAGACTGTGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGCGGGAGGCTCATGAGAGGGAGGTGGAAGGCTGGCAGGTCAAGATCCAGGAGCTGTCCAATAAGAAGGGCTGTGACACACGGCGAATGGAGGAGCTGTTCTCCAAGAACCAGCAGATGAAAGAGCAACAGCGGCTGCTGACTGAGAACATCAAGACTCTGGAGAACAGGTTGAGGGCCGGACTCTGTGACAGGTGCTCCGTCACGCAGGAGTTCGCCAAGAGGAGACAGCAGGATTTCGAAGCCTCCCACCTTCAGAGTCTGCAGCACATTTCGCTCATGGCAGGAGAAATGAACACCTTAAAAAAGGAAAACAAGAGACTGAAAGAGGAGAACAAAGTGCTGAAAGCCGCCCTGCATGAACAATCCTCCAACACCTCCGAGCTGACACTCACCAGCTCCCCCGACCTCTCACCTTCCTCTGGACCTGTGCCCCTCATCGCTACGGCAACCAGCAAACCCAGCAAGCAGCCACCAGATGGCGAGGTGGACCACAGGAAGGACGAACTGGAGCAGCGACAGTGGAAAAGCAGCAGCCGCCGATACTTTGAGTCGTACAAACCTCTGCCGATGCCTCCAAACAGGAAGTGCGATGCTAGTTTGTCCT] [+] EMBL CA588567 [TCCTCAAAGTAGCTCCTCTGTGTCGGGGCTCCTCAGCAGCACCCTTCAGGAGCCAGAGATCTTAGCTGTGTCAGACTGTGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGCGGGAGGCTCATGAGAGGGAGGTGGAAGGCTGGCAGGTCAAGATCCAGGAGCTGTCCAATAAGAAGGGCTGTGACACACGGCGAATGGAGGAGCTGTTCTCCAAGAACCAGCAGATGAAAGAGCAACAGCGGCTGCTGACTGAGAACATCAAGACTCTGGAGAACAGGTTGAGGGCCGGACTCTGTGACAGGTGCTCCGTCACGCAGGAGTTCGCCAAGAGGAGACAGCAGGATTTCGAAGCCTCCCACCTTCAGAGTCTGCAGCACATTTCGCTCATGGCAGGAGAAATGAACACCTTAAAAAAGGAAAACAAGAGACTGAAAGAGGAGAACAAAGTGCTGAAAGCCGCCCTGCATGAACAATCCTCCAACACCTCCGAGCTGACACTCACCAGCTCCCCCGACCTCTCACCTTCCTCTGGACCTGTGCCCCTCATCGCTACGGCAACCAGCAAACCCAGCAAGCAGCCACCAGATGGCGAGGTGGACCACAGGAAGGACGAACTGGAGCAGCGACAGTGGAAAAGCAGCAGCCGCCGATACTTTGAGTCGTACAAACCTCTGCCGATGCCTCCAAACAGGAAGTGCGATGCTAGTTTGTCCT] consensusID : consensus_714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [CGGACCAGGTCAACCAGTTTGGGGCATCTCAATTTTAAAANCTAATTTTCTCACACAACAATATNAAGGTTTGAGACAACAAACAGTCTCAAGAAGTTGAATCACCTTTAGCATCAGCAGATTCACCTGTGCTCACCTGCCAACCTCAGCTGTGTGTTACAGATGTGTGTGTCTGTGCCCAGACTGGGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGGGGGAGG] [+] EMBL FR0059643 [CGGACCAGGTCAACCAGTTTGGGGCATCTCAATTTTAAAANCTAATTTTCTCACACAACAATATNAAGGTTTGAGACAACAAACAGTCTCAAGAAGTTGAATCACCTTTAGCATCAGCAGATTCACCTGTGCTCACCTGCCAACCTCAGCTGTGTGTTACAGATGTGTGTGTCTGTGCCCAGACTGGGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGGGGGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_714#0 TCCTCAAAGTAGCTCCTCTGTGTCGGGGCTCCTCAGCAGCACCCTTCAGGAGCCAGAGAT 60 consensus_714#1 ------------------------------------------------------------ consensus_714#0 CTTAGCTGTGTCAGACTGTGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGCGGGAGG 120 consensus_714#1 ------------------------------------------------------------ consensus_714#0 CTCATGAGAGGGAGGTGGAAGGCTGGCAGGTCAAGATCCAGGAGCTGTCCAATAAGAAGG 180 consensus_714#1 ------------------------------------------------------------ consensus_714#0 GCTGTGACACACGGCGAATGGAGGAGCTGTTCTCCAAGAACCAGCAGATGAAAGAGCAAC 240 consensus_714#1 ------------------------------------------------------------ consensus_714#0 AGCGGCTGCTGACTGAGAACATCAAGACTCTGGAGAACAGGTTGAGGGCCGGACTCTGTG 300 consensus_714#1 ------------------------------------------------------------ consensus_714#0 ACAGGTGCTCCGTCACGCAGGAGTTCGCCAAGAGGAGACAGCAGGATTTCGAAGCCTCCC 360 consensus_714#1 -------------------------------------------------CGGACCAGGTC 11 ** * * * consensus_714#0 ACCTTCAGAGTCTGCAGCACATTTCGCTCATGGCAGGAGAAATGAACACCTTAAAAAAGG 420 consensus_714#1 AACC----AGTTTGGGGC--ATCTCAATTTT------AAAANCTAATTTTCTCACACAAC 59 * * *** ** ** ** ** * * * ** ** * * * * consensus_714#0 AAAACAAGAGACTGAAAGAGGAGAACAAAGTGCTGAAAGCCGCCCTGCATGAACAATCCT 480 consensus_714#1 AATATNAAGGTTTGAGACAACA-AACAGTCT-CAAGAAGTTGAATCACCTTTAGCATCAG 117 ** * * * *** * * * **** * * *** * * * * *** consensus_714#0 CCAACACCTCCGAGCTGACACTCACCAGCTCCCCCGACCTCTCACCTTCCTCTGGACCTG 540 consensus_714#1 CAGATTCACCTGTGCT--CACCTGCCAACCTCAGCTGTGTGTTACAGATGTGTGTGTCTG 175 * * * * * *** *** *** * * * * * ** * ** *** consensus_714#0 TGCCCCTCATCGCTACGGCAACCAGCAAACCCAGCAAGCAGCCACCAGATGGCGAGGTGG 600 consensus_714#1 TGCCCAG-ACTGGGATGGAGTGCTTCAA---CAGTCTTCTGCT-CAAGGTGGGGGAGG-- 228 ***** * * * ** * *** *** * ** * ** *** * * consensus_714#0 ACCACAGGAAGGACGAACTGGAGCAGCGACAGTGGAAAAGCAGCAGCCGCCGATACTTTG 660 consensus_714#1 ------------------------------------------------------------ consensus_714#0 AGTCGTACAAACCTCTGCCGATGCCTCCAAACAGGAAGTGCGATGCTAGTTTGTCCT 717 consensus_714#1 --------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |