These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GGAAAGGGTCACGAACTCTGACCCTCCCGTCAAATGCACCAGACTTAATATTACTTTGTTAATAGGACATATAATACACAATCCAACAACCTCTTGACTGCTGTCTCAAGAGGATACTGATGTGAAAACAGTGGGAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGATTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGGAAAGCAGCAGTTTATTCTCACGAATGCTGACTATTCCCCCGGTGGGAAAGTAATTGTGGCCAAACAAGAAAGCTCACCTAACAAAGTTATTCTCACTTCTTCAGACAGGTCTGGGGGTAACCAGCTGTTGGGTGCTTTCCCTGAGCTGGGTGGGCAACAGATTCTATTTGTGACTGTAAGGATCCCACCGTCTGGGCCTTGTGAAACCCTCCTATATTACTGTGTTGTCTGCGGAGAAAAAGGCTCTGGAAACACTACTGGGCCCTCAACTTTTGAAGGGTGTTAAGGGCTCCTTCTACGCCGT] [+] EMBL CA589136 [GGAAAGGGTCACGAACTCTGACCCTCCCGTCAAATGCACCAGACTTAATATTACTTTGTTAATAGGACATATAATACACAATCCAACAACCTCTTGACTGCTGTCTCAAGAGGATACTGATGTGAAAACAGTGGGAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGATTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGGAAAGCAGCAGTTTATTCTCACGAATGCTGACTATTCCCCCGGTGGGAAAGTAATTGTGGCCAAACAAGAAAGCTCACCTAACAAAGTTATTCTCACTTCTTCAGACAGGTCTGGGGGTAACCAGCTGTTGGGTGCTTTCCCTGAGCTGGGTGGGCAACAGATTCTATTTGTGACTGTAAGGATCCCACCGTCTGGGCCTTGTGAAACCCTCCTATATTACTGTGTTGTCTGCGGAGAAAAAGGCTCTGGAAACACTACTGGGCCCTCAACTTTTGAAGGGTGTTAAGGGCTCCTTCTACGCCGT] consensusID : consensus_760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [ATAATACACAATCGGAGGGGCCTCTTGACTGCTGTCTCAACACNATACTGATGTGAAAACAGTGCCAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGATTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGACGGCTCGGCGGNTAACCAGCTGTTGTTTGCTTCCCCTGATCTGGCTGGGCAACAGATTCAGTTTGTGACTGAAGGATCCGACCAGTCTGGCCTTGTGAAGCCAGTCGTAGAATACTGTGTTGTCTGCGGAGACAAGGCCTCGGG] [+] EMBL FR0061681 [ATAATACACAATCGGAGGGGCCTCTTGACTGCTGTCTCAACACNATACTGATGTGAAAACAGTGCCAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGATTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGACGGCTCGGCGGNTAACCAGCTGTTGTTTGCTTCCCCTGATCTGGCTGGGCAACAGATTCAGTTTGTGACTGAAGGATCCGACCAGTCTGGCCTTGTGAAGCCAGTCGTAGAATACTGTGTTGTCTGCGGAGACAAGGCCTCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_760#0 GGAAAGGGTCACGAACTCTGACCCTCCCGTCAAATGCACCAGACTTAATATTACTTTGTT 60 consensus_760#1 ------------------------------------------------------------ consensus_760#0 AATAGGACATATAATACACAATCCAACAA-CCTCTTGACTGCTGTCTCAAGAGGATACTG 119 consensus_760#1 ----------ATAATACACAATCGGAGGGGCCTCTTGACTGCTGTCTCAACACNATACTG 50 ************* * ******************** * ****** consensus_760#0 ATGTGAAAACAGTGGGAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGA 179 consensus_760#1 ATGTGAAAACAGTGCCAGAAAGTGCTTTTATTATCAGAATGGATGGGCAGACCCAAAGGA 110 ************** ******************************************** consensus_760#0 TTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGA 239 consensus_760#1 TTCAGCTTGTCTCAGCAGACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGA 170 ************************************************************ consensus_760#0 TCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTGGAAAGCAGCAGTTTATTCTCACGA 299 consensus_760#1 TCCAGATCGTCACAGCACTTCAGCCATCCTCCCCTG------------------------ 206 ************************************ consensus_760#0 ATGCTGACTATTCCCCCGGTGGGAAAGTAATTGTGGCCAAACAAGAAAGCTCACCTAACA 359 consensus_760#1 ------------------------------------------------------------ consensus_760#0 AAGTTATTCTCACTTCTTCAGACAGGTCTGGGGGTAACCAGCTGTTGGGTGCTTTCCCTG 419 consensus_760#1 ---------------------ACGGCTCGGCGGNTAACCAGCTGTTGTTTGCTTCCCCTG 245 ** * ** * ** ************* ***** ***** consensus_760#0 AGCTGGGTGGGCAACAGATTCTATTTGTGACTGTAAGGATCCCACCGTCTGGGCCTTGTG 479 consensus_760#1 ATCTGGCTGGGCAACAGATTCAGTTTGTGACTG-AAGGATCCGACCAGTCTGGCCTTGTG 304 * **** ************** ********** ******** *** ********* consensus_760#0 AAACCC-TCCTATATTACTGTGTTGTCTGCGGAGAAAAAGGCTCTGGAAACACTACTGGG 538 consensus_760#1 AAGCCAGTCGTAGAATACTGTGTTGTCTGCGGAGACAAGGCCTCGGG------------- 351 ** ** ** ** * ******************** ** * *** ** consensus_760#0 CCCTCAACTTTTGAAGGGTGTTAAGGGCTCCTTCTACGCCGT 580 consensus_760#1 ------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |