These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CACTTCGCTTGTGTTTGTATATTGTCCCCGTAAGAAATGTCGTACAACTACGTGGTGACAACACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGACCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGGTCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATTGATCCCTTCAGACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGCAATGTCAAGGATCCCATTGGGCGTCCATCAGAAACTGGCATTATTGGAATTGTGGACCCAGAGTGCCGAATGATTGGCCTGCGGCTTTATGATGGACTATTCAAGGTGATCCCGTTAGACCGAGACAACCGGGAACTCAAGGCCTACAACATCAGACTGGAGGAGCTGCACGTTATAGACGTACACTTCCTGTATGGCTGTCANGCTCCAACTGTCTGCTTCATCTACCAGGACCCCCAGGGGCGC] [+] EMBL CA589390 [CACTTCGCTTGTGTTTGTATATTGTCCCCGTAAGAAATGTCGTACAACTACGTGGTGACAACACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGACCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGGTCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATTGATCCCTTCAGACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGCAATGTCAAGGATCCCATTGGGCGTCCATCAGAAACTGGCATTATTGGAATTGTGGACCCAGAGTGCCGAATGATTGGCCTGCGGCTTTATGATGGACTATTCAAGGTGATCCCGTTAGACCGAGACAACCGGGAACTCAAGGCCTACAACATCAGACTGGAGGAGCTGCACGTTATAGACGTACACTTCCTGTATGGCTGTCANGCTCCAACTGTCTGCTTCATCTACCAGGACCCCCAGGGGCGC] consensusID : consensus_774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [TGTAGTGTTAGTAGTAAGAAATGTCGTACAACTACGTGGTGACAGCACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGACCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGGTCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATGGAACTCTTCAGACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGGAATGTCAAGGATC] [+] EMBL FR0058102 [TGTAGTGTTAGTAGTAAGAAATGTCGTACAACTACGTGGTGACAGCACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGACCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGGTCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATGGAACTCTTCAGACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGGAATGTCAAGGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_774#0 CACTTCGCTTGTGTTTGTATATTGTCCCC-GTAAGAAATGTCGTACAACTACGTGGTGAC 59 consensus_774#1 -----------------TGTAGTGTTAGTAGTAAGAAATGTCGTACAACTACGTGGTGAC 43 * ** *** ****************************** consensus_774#0 AACACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGA 119 consensus_774#1 AGCACAGAAACCGACGGCAGTGAATGCCTGCATAACGGGTCATTTCACGTCCGCCGAGGA 103 * ********************************************************** consensus_774#0 CCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGG 179 consensus_774#1 CCTCAATCTACTCATTGCTAAGAACACCCGATTGGAGATTTATGTGGTCACAGCAGAAGG 163 ************************************************************ consensus_774#0 TCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATTGATCCCTTCAG 239 consensus_774#1 TCTCAGGCCCGTCAAGGAAGTGGGCATGTATGGAAAAATTGCTGTTATGGAACTCTTCAG 223 ************************************************ ** * ****** consensus_774#0 ACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCAT 299 consensus_774#1 ACCAAAGGGTGAGAGCAAAGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCAT 283 ************************************************************ consensus_774#0 CCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGCAATGT 359 consensus_774#1 CCTAGAATACAAACAGAACGGAGAGAGCATTGACATCATCACCCGTGCTCACGGGAATGT 343 ****************************************************** ***** consensus_774#0 CAAGGATCCCATTGGGCGTCCATCAGAAACTGGCATTATTGGAATTGTGGACCCAGAGTG 419 consensus_774#1 CAAGGATC---------------------------------------------------- 351 ******** consensus_774#0 CCGAATGATTGGCCTGCGGCTTTATGATGGACTATTCAAGGTGATCCCGTTAGACCGAGA 479 consensus_774#1 ------------------------------------------------------------ consensus_774#0 CAACCGGGAACTCAAGGCCTACAACATCAGACTGGAGGAGCTGCACGTTATAGACGTACA 539 consensus_774#1 ------------------------------------------------------------ consensus_774#0 CTTCCTGTATGGCTGTCANGCTCCAACTGTCTGCTTCATCTACCAGGACCCCCAGGGGCG 599 consensus_774#1 ------------------------------------------------------------ consensus_774#0 C 600 consensus_774#1 - |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |