These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACGAAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG] [+] EMBL CA589510 [TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACGAAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG] consensusID : consensus_780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATGGAGAAGAACATATTCGCCCTACTGACGCACTCAG] [+] EMBL CA591011 [CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATGGAGAAGAACATATTCGCCCTACTGACGCACTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_780#0 ---TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCT 57 consensus_780#1 CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCT 60 ********************************************************* consensus_780#0 GAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATA 117 consensus_780#1 GAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATA 120 ************************************************************ consensus_780#0 AAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACG 177 consensus_780#1 AAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAAC--------- 171 *************************************************** consensus_780#0 AAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAAC 237 consensus_780#1 ------------------------------------------------------------ consensus_780#0 AAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTG 297 consensus_780#1 AAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTG 231 ************************************************************ consensus_780#0 GTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAG 357 consensus_780#1 GTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAG 291 ************************************************************ consensus_780#0 GAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGG 417 consensus_780#1 GAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGG 351 ************************************************************ consensus_780#0 TTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGAC 477 consensus_780#1 TTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGAC 411 ************************************************************ consensus_780#0 AACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCT 537 consensus_780#1 AACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCT 471 ************************************************************ consensus_780#0 GATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGA 597 consensus_780#1 GATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGA 531 ************************************************************ consensus_780#0 CTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG------------------------ 633 consensus_780#1 CTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATG 591 ***************** ****************** consensus_780#0 ---------------------------------- consensus_780#1 GAGAAGAACATATTCGCCCTACTGACGCACTCAG 625 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |