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Takifugu rubripes
cluster # 780 cluster # 780       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_780#0 length = 633 sequences # 1  
consensus_780#1 length = 625 sequences # 1  

consensusID : consensus_780#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence
                              [TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACGAAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG]

[+] EMBL CA589510             [TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACGAAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG]


>consensus_780#0 TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAA GAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAG ACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACGAAG ACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAACAAA ACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTC AACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAG ACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTC GAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAAC AGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGAT GGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTG AGTGACCGACTCAGCTACATCTTTAATTCAGTG



consensusID : consensus_780#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATGGAGAAGAACATATTCGCCCTACTGACGCACTCAG]

[+] EMBL CA591011             [CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCTGAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATAAAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACAAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATGGAGAAGAACATATTCGCCCTACTGACGCACTCAG]


>consensus_780#1 CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCT GAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATA AAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACAAAACCATC CTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTGGTCAACTAC GCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAGGAGACGACG AGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGGTTCGAGGAG AAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGACAACAGAGAT GAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCTGATGGTGGA GTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGACTGAGTGAC CGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATGGAGAAGAAC ATATTCGCCCTACTGACGCACTCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_780#0      ---TGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCT 57
consensus_780#1      CTCTGTCAAACCGCAGCTGGCAGCTGATTCCTGTGTGTCGGGTAAAGATTCGAGGACTCT 60
                        *********************************************************

consensus_780#0      GAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATA 117
consensus_780#1      GAAGAAGACAGCATCGTCATGGCTACTGAGAACAGTGAGACCTTCCTGAGTTCCATCATA 120
                     ************************************************************

consensus_780#0      AAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAACGCGGTGACG 177
consensus_780#1      AAGACGAGTCAGCTGATCCAGTCGGGATCTCCTAAAATCTACCAGCTGAAC--------- 171
                     ***************************************************         

consensus_780#0      AAGACCACCGAAGGCCTGAAAACAGTGACTGTCGGCACCAAAAATGTGAACAGGCTGAAC 237
consensus_780#1      ------------------------------------------------------------
                                                                                 

consensus_780#0      AAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTG 297
consensus_780#1      AAAACCATCCTGCTTCTGGGTGAGACAGGAACAGGGAAGTCCGCTCTGATCAACGTCCTG 231
                     ************************************************************

consensus_780#0      GTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAG 357
consensus_780#1      GTCAACTACGCCATGGGAGTGAAGTGGGAGGACGAAGTCTGGTTCAAGATCGTAGAGGAG 291
                     ************************************************************

consensus_780#0      GAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGG 417
consensus_780#1      GAGACGACGAGGCAGTCCGAGAGTCAGACGTCAGACGTGATCATGTACCAGATCTTTGGG 351
                     ************************************************************

consensus_780#0      TTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGAC 477
consensus_780#1      TTCGAGGAGAAAACGTTTCCTTTCTCTCTGACCCTCGTCGATACTCCCGGGTACGGAGAC 411
                     ************************************************************

consensus_780#0      AACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCT 537
consensus_780#1      AACAGAGATGAAATAAATGATGACATCATTGGTGAGAGACTGCTGGAGTGGTTCACCTCT 471
                     ************************************************************

consensus_780#0      GATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGA 597
consensus_780#1      GATGGTGGAGTTCACGAGGTCCACGCAGTGGGTCTGGTGCTGAAGGCCAGCGATAATCGA 531
                     ************************************************************

consensus_780#0      CTGAGTGACCGACTCAGCTACATCTTTAATTCAGTG------------------------ 633
consensus_780#1      CTGAGTGACCGACTCAGGTACATCTTTAATTCAGTGGCGTCTCTGTTCGCAGCAAACATG 591
                     ***************** ******************                        

consensus_780#0      ----------------------------------
consensus_780#1      GAGAAGAACATATTCGCCCTACTGACGCACTCAG 625
                                                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)