These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [ACGATGTCAAAGCGACCTTCAGGGGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGTCCCAAAGCCTCCCAAACCTGCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTATGGGACCAAGTGAAAGCATTCAATCCAGACCTGAAGCTGTGGGAAATAGGGAAAATAATCGGGGGGATGTGGAGGGACCTGAGCGACGAAGAGAAGCA] [+] EMBL FR0061818 [ACGATGTCAAAGCGACCTTCAGGGGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGTCCCAAAGCCTCCCAAACCTGCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTATGGGACCAAGTGAAAGCATTCAATCCAGACCTGAAGCTGTGGGAAATAGGGAAAATAATCGGGGGGATGTGGAGGGACCTGAGCGACGAAGAGAAGCA] consensusID : consensus_788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [ACAAAGAGGGATAGTGGGTTTCATTATGGCAGCAAAGTCCTCTCATTAAGCCAGGCGTCAGCAACGATGTCAAAGCGACCTTCATATGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGGCCCAAAGCCTCCCAAACCTCCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTAAGCAGGAAGGTATGGGACCAGGTGAAAGCATC] [+] EMBL FR0061553 [ACAAAGAGGGATAGTGGGTTTCATTATGGCAGCAAAGTCCTCTCATTAAGCCAGGCGTCAGCAACGATGTCAAAGCGACCTTCATATGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAAATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAACCTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGGCCCAAAGCCTCCCAAACCTCCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTAAGCAGGAAGGTATGGGACCAGGTGAAAGCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_788#0 ------------------------------------------------------------ consensus_788#1 ACAAAGAGGGATAGTGGGTTTCATTATGGCAGCAAAGTCCTCTCATTAAGCCAGGCGTCA 60 consensus_788#0 ---ACGATGTCAAAGCGACCTTCAGGGGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAA 57 consensus_788#1 GCAACGATGTCAAAGCGACCTTCATATGCTCCCCCCCCTCCCCCTGCCCCAGCAACCCAA 120 ********************* ********************************* consensus_788#0 ATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAAC 117 consensus_788#1 ATGCCTTCCACCCCAGGGTTTGTGGGCTACAATCCTTACAGCCATCTGGCCTACAACAAC 180 ************************************************************ consensus_788#0 CTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGTCCCA 177 consensus_788#1 CTCCGGCTGGGAGGGAGCTCCGGAGGCTCCAGCAGGAACTCCTCGGGCATCACCGGCCCA 240 ******************************************************* **** consensus_788#0 AAGCCTCCCAAACCTGCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTA 237 consensus_788#1 AAGCCTCCCAAACCTCCAGACAAGCCTCTGATGCCTTACATGCGGGACAGCCGGAAGGTA 300 *************** ******************************************** consensus_788#0 TGGGACCAAGTGAAAGCATTCAATCCAGACCTGAAGCTGTGGGAAATAGGGAAAATAATC 297 consensus_788#1 -AGCAGGAAGGTATGGGACCAGGTGAAAGCATC--------------------------- 332 * * *** * * * * * * * consensus_788#0 GGGGGGATGTGGAGGGACCTGAGCGACGAAGAGAAGCA 335 consensus_788#1 -------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |