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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 797 cluster # 797       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_797#0 length = 452 sequences # 1  
 consensus_797#1 length = 266 sequences # 1  
consensusID : consensus_797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence 
                              [AGGTTAAACAGGCAGGGAGAACTAGGTGGATGAGAAAATAGCTGGAGGGGAAGGTTTACGCTCACTCCACCGAAGATTAGTCTCACCAGTGAACTCCTTCAGTGTACAGGCTTTCTCTTTCTCCTCTTGTGGTGACCGGCCACGGGAATGGGAATGGACAGGATTCTGTGGACAGTCCTTGTGCTGCTGCAAGGGCTGGCACCTTCTGAGGCTCTGAGAGAGGAATGGCAGCCAGCAGACTATTTAGACTCTTTGGAACAAGCAAAGCAGTTCCTTGCTGACTACAACAGCACTGCAGAGGAGGTACTTTTCTTTTCCCAGTCTGCCTCCTGGAACTACAACACCAACATTACAGACTACAACTCCAAGCTTCAGGTAAATGCGTCTCTGGAAGAACAGGCCTTTACGGCAGCATGGGGGTCAAAAGCCAAGACAACTTTCGTAAAAGCTTT]

[+] EMBL CA589591             [AGGTTAAACAGGCAGGGAGAACTAGGTGGATGAGAAAATAGCTGGAGGGGAAGGTTTACGCTCACTCCACCGAAGATTAGTCTCACCAGTGAACTCCTTCAGTGTACAGGCTTTCTCTTTCTCCTCTTGTGGTGACCGGCCACGGGAATGGGAATGGACAGGATTCTGTGGACAGTCCTTGTGCTGCTGCAAGGGCTGGCACCTTCTGAGGCTCTGAGAGAGGAATGGCAGCCAGCAGACTATTTAGACTCTTTGGAACAAGCAAAGCAGTTCCTTGCTGACTACAACAGCACTGCAGAGGAGGTACTTTTCTTTTCCCAGTCTGCCTCCTGGAACTACAACACCAACATTACAGACTACAACTCCAAGCTTCAGGTAAATGCGTCTCTGGAAGAACAGGCCTTTACGGCAGCATGGGGGTCAAAAGCCAAGACAACTTTCGTAAAAGCTTT]




>consensus_797#0
AGGTTAAACAGGCAGGGAGAACTAGGTGGATGAGAAAATAGCTGGAGGGGAAGGTTTACG
CTCACTCCACCGAAGATTAGTCTCACCAGTGAACTCCTTCAGTGTACAGGCTTTCTCTTT
CTCCTCTTGTGGTGACCGGCCACGGGAATGGGAATGGACAGGATTCTGTGGACAGTCCTT
GTGCTGCTGCAAGGGCTGGCACCTTCTGAGGCTCTGAGAGAGGAATGGCAGCCAGCAGAC
TATTTAGACTCTTTGGAACAAGCAAAGCAGTTCCTTGCTGACTACAACAGCACTGCAGAG
GAGGTACTTTTCTTTTCCCAGTCTGCCTCCTGGAACTACAACACCAACATTACAGACTAC
AACTCCAAGCTTCAGGTAAATGCGTCTCTGGAAGAACAGGCCTTTACGGCAGCATGGGGG
TCAAAAGCCAAGACAACTTTCGTAAAAGCTTT

consensusID : consensus_797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence 
                              [TATCTATATCTTATCTAGCATCGCTCTGAGTAAGGGGGGCGTGGATATTATGATGGAAAATTGCCATCCGCCTTCTGACAGGGTGGTAAAATAAAGGTAGGGGAAGAGATATTGAGGAGGAGACCTGGGGGGTGGACATGTCTATCGCTGTTATGTGTGGGCAGGTTTAAACTGACACTTTAAAAGAGACTTGAATTGACTTTTCTTCATTCATCAGAAAGGCAGGCAGGTTAAACAGGCAGGGAGAACTATGTGTATTAGAAAAT]

[+] EMBL FR0059384            [TATCTATATCTTATCTAGCATCGCTCTGAGTAAGGGGGGCGTGGATATTATGATGGAAAATTGCCATCCGCCTTCTGACAGGGTGGTAAAATAAAGGTAGGGGAAGAGATATTGAGGAGGAGACCTGGGGGGTGGACATGTCTATCGCTGTTATGTGTGGGCAGGTTTAAACTGACACTTTAAAAGAGACTTGAATTGACTTTTCTTCATTCATCAGAAAGGCAGGCAGGTTAAACAGGCAGGGAGAACTATGTGTATTAGAAAAT]




>consensus_797#1
TATCTATATCTTATCTAGCATCGCTCTGAGTAAGGGGGGCGTGGATATTATGATGGAAAA
TTGCCATCCGCCTTCTGACAGGGTGGTAAAATAAAGGTAGGGGAAGAGATATTGAGGAGG
AGACCTGGGGGGTGGACATGTCTATCGCTGTTATGTGTGGGCAGGTTTAAACTGACACTT
TAAAAGAGACTTGAATTGACTTTTCTTCATTCATCAGAAAGGCAGGCAGGTTAAACAGGC
AGGGAGAACTATGTGTATTAGAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_797#0      AGGTTAAACAGGCAGGGAGAACTAGGTGGATGAGAAAATAGCTGGAGGGGAAGGTTTACG 60
consensus_797#1      ------------------------------------------------------------
                                                                                 

consensus_797#0      CTCACTCCACCGAAGATTAGTCTCACCAGTGAACTCCTTCAGTGTACAGGCTTTCTCTTT 120
consensus_797#1      ---------------------------------------------------TATCTATAT 9
                                                                        * *** * *

consensus_797#0      CTCCTCTTGTGGTGACCGGCCACGGGAATGGGAATGGACAGGATTCTGTGGACAGTCCTT 180
consensus_797#1      CTTATCTAGCATCGCTCTG--AGTAAGGGGGGCGTGGATATTATGATGGAAAATTGCCAT 67
                     **  *** *    *  * *  *       ***  **** *  **  **   *    ** *

consensus_797#0      GTGCTGCTGCAAGGGCTGGCACCTTCTGAGGCTCTGAGAGAGGAATGGCAGCCAGCAGAC 240
consensus_797#1      CCGCCTTCTGACAGGGTGGTAAAATA-AAGGTAGGGGAAGAGATATTGAGG--AGGAGAC 124
                       **      *  ** *** *   *   ***    *  ****  ** *  *  ** ****

consensus_797#0      TATTTAGACTCTTTGGAACAAGCAAAGCAGTTCCTTGCTGACTACAA--CAGCACTGCAG 298
consensus_797#1      C-TGGGGGGTGGACATGTCTATCGCTGTTATGTGTGGGCAGGTTTAAACTGACACTTTAA 183
                       *   *  *        * * *   *   *   * *     *  **     ****  * 

consensus_797#0      AGGAGGT---ACTTTTCTTTTCCCAGTCTGCCTCCTGGAACTACAACACCAACATTACAG 355
consensus_797#1      AAGAGACTTGAATTGACTTTTCTTCATTCATCAGAAAGGCAGGCAGGTTAAACAG-GCAG 242
                     * ***     * **  ******    *    *     *     **     ****   ***

consensus_797#0      ACTACAACTCCAAGCTTCAGGTAAATGCGTCTCTGGAAGAACAGGCCTTTACGGCAGCAT 415
consensus_797#1      GG-AGAACTATGTGTATTAGA-AAAT---------------------------------- 266
                        * ****    *  * **  ****                                  

consensus_797#0      GGGGGTCAAAAGCCAAGACAACTTTCGTAAAAGCTTT 452
consensus_797#1      -------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)