These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence [ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCCGTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGCTGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGCTTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAGTTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGACCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCTGCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACTTAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGCCATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGACTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCTGCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCGGTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAATGTCCGTTTCTG] [+] EMBL CA846233 [ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCCGTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGCTGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGCTTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAGTTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGACCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCTGCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACTTAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGCCATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGACTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCTGCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCGGTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAATGTCCGTTTCTG] consensusID : consensus_835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGGTACCGTGTGGCGGCTGTTGTCAGTCCGGCATTAAATGCGTGCGTTTGGCGGCGTGAAAGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAACCGAACATCTTTAAAAACGCTTTAAAAACAAATTCTAAAAGTAGATATTTATTCACGGCAACGTCGGTAACCTGCCACCCAGCGGGACAGACGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAATACTAAAGTGCGTCTGTTGTAACCTGAAGAGAAGGTTCCACTTTTGCGCGCCTGTCGTGGCCTCCTTCAACCCGATAGTTACAGAACCTTTAGTTCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCCCGTCAT] [+] EMBL CA589986 [GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGGTACCGTGTGGCGGCTGTTGTCAGTCCGGCATTAAATGCGTGCGTTTGGCGGCGTGAAAGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAACCGAACATCTTTAAAAACGCTTTAAAAACAAATTCTAAAAGTAGATATTTATTCACGGCAACGTCGGTAACCTGCCACCCAGCGGGACAGACGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAATACTAAAGTGCGTCTGTTGTAACCTGAAGAGAAGGTTCCACTTTTGCGCGCCTGTCGTGGCCTCCTTCAACCCGATAGTTACAGAACCTTTAGTTCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCCCGTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_835#0 ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTC 60 consensus_835#1 -------GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTC 53 ***************************************************** consensus_835#0 CCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCC 120 consensus_835#1 CCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAG-GTACCGTGTGGCGGCTGTT--- 109 ************************************* * * * **** ****** consensus_835#0 GTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGC 180 consensus_835#1 ------GTCAGTCCGGCATTAAATGCGTGCGTT--TGGC-------------GGCGTGAA 148 **** **** * * ** * ** ** ***** consensus_835#0 TGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGC 240 consensus_835#1 AGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAA 208 * * *** * **** * ** * * * ** * consensus_835#0 TTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAG 300 consensus_835#1 CCGAACATCTTTAAAAACGCTTTAAAAACAAATT----------CTAAAAGT---AGATA 255 **** * * * ** *** * * ** **** *** consensus_835#0 TTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGA 360 consensus_835#1 TTTATTCACGGCAACGTCGGTAACCTGCCACCCAGC----------GGGACAGA------ 299 ** * ** * *** ** ** ** * ****** consensus_835#0 CCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCT 420 consensus_835#1 -CGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAA----TACTAAAG-----TGCGTCT 349 **** ** ** * * * ** * ** ** * * ** *** ** consensus_835#0 GCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACT 480 consensus_835#1 GTTGTAACCTGAAGAGAAGGTTCCACTTT--TGCGCGCCTGTCGTGGCCT-CCTTCAACC 406 * * ** * ** * * ** * ** * * * *** consensus_835#0 TAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGC 540 consensus_835#1 CGATAGTTACAGAACCTTTAGT-TCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCC 465 **** * *** * * ** * * ** *** **** * ** * * consensus_835#0 CATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGA 600 consensus_835#1 CGTCAT------------------------------------------------------ 471 * * * consensus_835#0 CTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCT 660 consensus_835#1 ------------------------------------------------------------ consensus_835#0 GCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCG 720 consensus_835#1 ------------------------------------------------------------ consensus_835#0 GTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAA 780 consensus_835#1 ------------------------------------------------------------ consensus_835#0 TGTCCGTTTCTG 792 consensus_835#1 ------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |