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Takifugu rubripes
cluster # 835 cluster # 835       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_835#0 length = 792 sequences # 1  
consensus_835#1 length = 471 sequences # 1  

consensusID : consensus_835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 792
fasta sequence
                              [ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCCGTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGCTGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGCTTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAGTTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGACCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCTGCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACTTAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGCCATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGACTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCTGCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCGGTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAATGTCCGTTTCTG]

[+] EMBL CA846233             [ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCCGTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGCTGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGCTTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAGTTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGACCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCTGCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACTTAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGCCATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGACTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCTGCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCGGTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAATGTCCGTTTCTG]


>consensus_835#0 ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTC CCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCC GTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGC TGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGC TTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAG TTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGA CCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCT GCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACT TAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGC CATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGA CTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCT GCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCG GTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAA TGTCCGTTTCTG



consensusID : consensus_835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence
                              [GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGGTACCGTGTGGCGGCTGTTGTCAGTCCGGCATTAAATGCGTGCGTTTGGCGGCGTGAAAGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAACCGAACATCTTTAAAAACGCTTTAAAAACAAATTCTAAAAGTAGATATTTATTCACGGCAACGTCGGTAACCTGCCACCCAGCGGGACAGACGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAATACTAAAGTGCGTCTGTTGTAACCTGAAGAGAAGGTTCCACTTTTGCGCGCCTGTCGTGGCCTCCTTCAACCCGATAGTTACAGAACCTTTAGTTCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCCCGTCAT]

[+] EMBL CA589986             [GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGGTACCGTGTGGCGGCTGTTGTCAGTCCGGCATTAAATGCGTGCGTTTGGCGGCGTGAAAGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAACCGAACATCTTTAAAAACGCTTTAAAAACAAATTCTAAAAGTAGATATTTATTCACGGCAACGTCGGTAACCTGCCACCCAGCGGGACAGACGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAATACTAAAGTGCGTCTGTTGTAACCTGAAGAGAAGGTTCCACTTTTGCGCGCCTGTCGTGGCCTCCTTCAACCCGATAGTTACAGAACCTTTAGTTCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCCCGTCAT]


>consensus_835#1 GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTG CATCCAGCTCCGGATTCCGACTGTCGAAAGGTACCGTGTGGCGGCTGTTGTCAGTCCGGC ATTAAATGCGTGCGTTTGGCGGCGTGAAAGCGACACAAGCCGAGGCTACACAGGTGCGGG CGGGATGTGCAGCGACGCGGGATATTAACCGAACATCTTTAAAAACGCTTTAAAAACAAA TTCTAAAAGTAGATATTTATTCACGGCAACGTCGGTAACCTGCCACCCAGCGGGACAGAC GCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAATACTAAAGTGCGTCTGTTGTAACCTG AAGAGAAGGTTCCACTTTTGCGCGCCTGTCGTGGCCTCCTTCAACCCGATAGTTACAGAA CCTTTAGTTCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCCCGTCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_835#0      ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTC 60
consensus_835#1      -------GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTC 53
                            *****************************************************

consensus_835#0      CCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCC 120
consensus_835#1      CCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAG-GTACCGTGTGGCGGCTGTT--- 109
                     ************************************* * * *  **** ******    

consensus_835#0      GTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGC 180
consensus_835#1      ------GTCAGTCCGGCATTAAATGCGTGCGTT--TGGC-------------GGCGTGAA 148
                           ****   ****  *    * ** * **    **             *****   

consensus_835#0      TGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGC 240
consensus_835#1      AGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAA 208
                      *    *   ***  *   ****        *        **  * * * **   *    

consensus_835#0      TTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAG 300
consensus_835#1      CCGAACATCTTTAAAAACGCTTTAAAAACAAATT----------CTAAAAGT---AGATA 255
                         ****     * *  * **  *** *    *          **  ****   ***  

consensus_835#0      TTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGA 360
consensus_835#1      TTTATTCACGGCAACGTCGGTAACCTGCCACCCAGC----------GGGACAGA------ 299
                     **   * ** *  ***      **     ** ** *          ******        

consensus_835#0      CCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCT 420
consensus_835#1      -CGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAA----TACTAAAG-----TGCGTCT 349
                      **** **  **   * *   * **  *  ** **     * *  **      ***  **

consensus_835#0      GCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACT 480
consensus_835#1      GTTGTAACCTGAAGAGAAGGTTCCACTTT--TGCGCGCCTGTCGTGGCCT-CCTTCAACC 406
                     *   *  **            * ** * *  **   * **    *       * * *** 

consensus_835#0      TAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGC 540
consensus_835#1      CGATAGTTACAGAACCTTTAGT-TCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCC 465
                       ****    * ***  * *   **   * *      **   *** ****  * ** * *

consensus_835#0      CATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGA 600
consensus_835#1      CGTCAT------------------------------------------------------ 471
                     * *  *                                                      

consensus_835#0      CTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCT 660
consensus_835#1      ------------------------------------------------------------
                                                                                 

consensus_835#0      GCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCG 720
consensus_835#1      ------------------------------------------------------------
                                                                                 

consensus_835#0      GTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAA 780
consensus_835#1      ------------------------------------------------------------
                                                                                 

consensus_835#0      TGTCCGTTTCTG 792
consensus_835#1      ------------
                                 




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)