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Takifugu rubripes
cluster # 848 cluster # 848       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_848#0 length = 604 sequences # 1  
consensus_848#1 length = 544 sequences # 1  

consensusID : consensus_848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence
                              [CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCACTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCATCAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCACCCGGAGACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGCAGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCAACACTCTGCCCACGGAATTCAGCCTCACCCCCTTTGAGATGCTGATGCAGGACATACGAGCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAGAGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTTTCCGAG]

[+] EMBL CA590800             [CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCACTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCATCAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCACCCGGAGACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGCAGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCAACACTCTGCCCACGGAATTCAGCCTCACCCCCTTTGAGATGCTGATGCAGGACATACGAGCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAGAGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTTTCCGAG]


>consensus_848#0 CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGC CAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCG CGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCA CTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCAT CAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCACCCGGAGA CAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGCA GCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCAA CACTCTGCCCACGGAATTCAGCCTCACCCCCTTTGAGATGCTGATGCAGGACATACGAGC TCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAGAG GAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTTTC CGAG



consensusID : consensus_848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence
                              [GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGGAACTGTCTCTGGAGGAGGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGGCATGGGCGGTGTGCTACCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCAGGAGTCAGCCCGGTAAAGGGTCCATCTTCCATCCTCCTGCACCGGGACGGAACCGTGGCCCTGCGGACGCGCAACAGCGGTCCTGACCAGTTGAGCGACGCCGCCCTTGTCTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAGGTGGTCCAGTCGCTGGGAGTGGCCATCTACCGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGGAGCTCGGCCCGCAGCTGGAGCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGCGGAGAGG]

[+] EMBL CA590119             [GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGGAACTGTCTCTGGAGGAGGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGGCATGGGCGGTGTGCTACCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCAGGAGTCAGCCCGGTAAAGGGTCCATCTTCCATCCTCCTGCACCGGGACGGAACCGTGGCCCTGCGGACGCGCAACAGCGGTCCTGACCAGTTGAGCGACGCCGCCCTTGTCTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAGGTGGTCCAGTCGCTGGGAGTGGCCATCTACCGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGGAGCTCGGCCCGCAGCTGGAGCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGCGGAGAGG]


>consensus_848#1 GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAG CGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGG GACCTGTCCGAGCCCCGGGAACTGTCTCTGGAGGAGGTGCTGGAGTCCTATGAGCAGCCC ATCAACGAGGAGCAGGCATGGGCGGTGTGCTACCAGTGCTGCAGCGGGCTCCGGGTGCCC CGCCCGCCAACGGCAGGAGTCAGCCCGGTAAAGGGTCCATCTTCCATCCTCCTGCACCGG GACGGAACCGTGGCCCTGCGGACGCGCAACAGCGGTCCTGACCAGTTGAGCGACGCCGCC CTTGTCTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAGGTGGTCCAG TCGCTGGGAGTGGCCATCTACCGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGG GAGCTCGGCCCGCAGCTGGAGCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGCGGA GAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_848#0      CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGC 60
consensus_848#1      -------------GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGC 47
                                  ***********************************************

consensus_848#0      CAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCG 120
consensus_848#1      CAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCG 107
                     ************************************************************

consensus_848#0      CGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCA 180
consensus_848#1      CGTCGAGTCGCGGGACCTGTCCGAGCCCCGG------------GAACTGTCTCTGGAGGA 155
                     *******************************                ** ***  *** *

consensus_848#0      CTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCAT 240
consensus_848#1      GGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGG---CATGGGCGGTGTGCTA 212
                         * ** *  **    *   *   *    **   ** **       * ** *   *  

consensus_848#0      CAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCA-CCCGGAG 299
consensus_848#1      CCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCA--GGAGTCAGCCCGGTA 270
                     * *   * *   **     * * ***       *   **  **  *** *** *****  

consensus_848#0      ACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGC 359
consensus_848#1      AAGGGTCCATCTTCCATCCTCCTGCACCGGGAC---GGAACCGTGGCCCTGCGGACGCGC 327
                     *    ** *    * * *    *** * *   *   *  ** * *  * *  *   * **

consensus_848#0      AGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCA 419
consensus_848#1      AAC------AGCGGTCCTGACC---AGTTGAGC-------------GACGCCGCCCTTGT 365
                     * *      **  *  * * *    ***  ***             *  ** ******  

consensus_848#0      ACACTCTGCCCACGGAATTCAGCCTCACCCC-CTTTGAGATGCTGATGCAGGACATACGA 478
consensus_848#1      CTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAG-GTGGTCCAGTCG- 423
                         ** * * * *    **  * **   *  ** **    **    *  *  **  ** 

consensus_848#0      GCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAG 538
consensus_848#1      -CTGGGAGTGGCCATCTAC-CGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGG 481
                      ** * *    *** ** * * *  **  *   ** ***   *   *  * **      *

consensus_848#0      AGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTT 598
consensus_848#1      AGCTCGGCCCGCAGCTGGA----GCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGC 537
                     **    ****        *    *  * *****  *  **   *        * *  *  

consensus_848#0      TCCGAG- 604
consensus_848#1      GGAGAGG 544
                        *** 




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)