These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCACTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCATCAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCACCCGGAGACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGCAGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCAACACTCTGCCCACGGAATTCAGCCTCACCCCCTTTGAGATGCTGATGCAGGACATACGAGCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAGAGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTTTCCGAG] [+] EMBL CA590800 [CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCACTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCATCAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCACCCGGAGACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGCAGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCAACACTCTGCCCACGGAATTCAGCCTCACCCCCTTTGAGATGCTGATGCAGGACATACGAGCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAGAGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTTTCCGAG] consensusID : consensus_848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGGAACTGTCTCTGGAGGAGGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGGCATGGGCGGTGTGCTACCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCAGGAGTCAGCCCGGTAAAGGGTCCATCTTCCATCCTCCTGCACCGGGACGGAACCGTGGCCCTGCGGACGCGCAACAGCGGTCCTGACCAGTTGAGCGACGCCGCCCTTGTCTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAGGTGGTCCAGTCGCTGGGAGTGGCCATCTACCGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGGAGCTCGGCCCGCAGCTGGAGCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGCGGAGAGG] [+] EMBL CA590119 [GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGGAACTGTCTCTGGAGGAGGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGGCATGGGCGGTGTGCTACCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCAGGAGTCAGCCCGGTAAAGGGTCCATCTTCCATCCTCCTGCACCGGGACGGAACCGTGGCCCTGCGGACGCGCAACAGCGGTCCTGACCAGTTGAGCGACGCCGCCCTTGTCTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAGGTGGTCCAGTCGCTGGGAGTGGCCATCTACCGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGGAGCTCGGCCCGCAGCTGGAGCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGCGGAGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_848#0 CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGC 60 consensus_848#1 -------------GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGC 47 *********************************************** consensus_848#0 CAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCG 120 consensus_848#1 CAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCG 107 ************************************************************ consensus_848#0 CGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCA 180 consensus_848#1 CGTCGAGTCGCGGGACCTGTCCGAGCCCCGG------------GAACTGTCTCTGGAGGA 155 ******************************* ** *** *** * consensus_848#0 CTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCAT 240 consensus_848#1 GGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGG---CATGGGCGGTGTGCTA 212 * ** * ** * * * ** ** ** * ** * * consensus_848#0 CAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCA-CCCGGAG 299 consensus_848#1 CCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCA--GGAGTCAGCCCGGTA 270 * * * * ** * * *** * ** ** *** *** ***** consensus_848#0 ACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGC 359 consensus_848#1 AAGGGTCCATCTTCCATCCTCCTGCACCGGGAC---GGAACCGTGGCCCTGCGGACGCGC 327 * ** * * * * *** * * * * ** * * * * * * ** consensus_848#0 AGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCA 419 consensus_848#1 AAC------AGCGGTCCTGACC---AGTTGAGC-------------GACGCCGCCCTTGT 365 * * ** * * * * *** *** * ** ****** consensus_848#0 ACACTCTGCCCACGGAATTCAGCCTCACCCC-CTTTGAGATGCTGATGCAGGACATACGA 478 consensus_848#1 CTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAG-GTGGTCCAGTCG- 423 ** * * * * ** * ** * ** ** ** * * ** ** consensus_848#0 GCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAG 538 consensus_848#1 -CTGGGAGTGGCCATCTAC-CGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGG 481 ** * * *** ** * * * ** * ** *** * * * ** * consensus_848#0 AGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTT 598 consensus_848#1 AGCTCGGCCCGCAGCTGGA----GCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGC 537 ** **** * * * ***** * ** * * * * consensus_848#0 TCCGAG- 604 consensus_848#1 GGAGAGG 544 *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |