These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [TTACTATGGCTCCAGCGAAGGAAAATGGTGGACTTGACAATCTCGCTTTTGATATGGACGAAGACATAAAAGACGGGCTCAAAGAAATGAGGGAAAAGCCGTCAGCATTACCTGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATGCTGCAGGTCACCTTTGGAGTCAGGCTTCCTATCCTACAGGGGGGTACATTTTCTTTGCTGACCCCCGCTATGGCAATGTTGTCCATGCCAGAGTGGGAGTGTCCTGCTTGGACTTACAATGCCAGTTTGGTTAACGTCTCATCACCAGTCTTTATAGAAGTGTGGCAGAGCCGGATGAGAACTCTGCAGGGCTCCATCATGGTGGCTTCGCTCCTCCAGATCGTGGCCGGCTTCTCGGGCATGATCGGCTTTCTCATGCGCTTCATAGGACCTTTGACCATTGCTCCCACAATCACCCTCATTGGTCTGTCGGTTTATCAAACAGCCGGAGCCAAAGCTGGGAGCCACTGGGGCATCTCTGCCATGACCACTGCGCTGATCATCCT] [+] EMBL CA590160 [TTACTATGGCTCCAGCGAAGGAAAATGGTGGACTTGACAATCTCGCTTTTGATATGGACGAAGACATAAAAGACGGGCTCAAAGAAATGAGGGAAAAGCCGTCAGCATTACCTGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATGCTGCAGGTCACCTTTGGAGTCAGGCTTCCTATCCTACAGGGGGGTACATTTTCTTTGCTGACCCCCGCTATGGCAATGTTGTCCATGCCAGAGTGGGAGTGTCCTGCTTGGACTTACAATGCCAGTTTGGTTAACGTCTCATCACCAGTCTTTATAGAAGTGTGGCAGAGCCGGATGAGAACTCTGCAGGGCTCCATCATGGTGGCTTCGCTCCTCCAGATCGTGGCCGGCTTCTCGGGCATGATCGGCTTTCTCATGCGCTTCATAGGACCTTTGACCATTGCTCCCACAATCACCCTCATTGGTCTGTCGGTTTATCAAACAGCCGGAGCCAAAGCTGGGAGCCACTGGGGCATCTCTGCCATGACCACTGCGCTGATCATCCT] consensusID : consensus_849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [CGTTCTCAAAGAAATGAGGGAAAAGCCGTCAGGTGAGGACAAAAGCAAACTGGCCTACTGTGTGACAGACACCCCTCCGTGGTACCTTTGCATTGCTTTGTCCATTCAGCATTACCTGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATGCTGCAGGTCACCTTTNGAGNCAGGCTTTCTATCCTACANNNNNNNACATTTTCTTTGCTNACCCCCGCTATGGCAATGTTGTCCATGCCAGAGGGACAATTTCCTGCTTGGCTTTACAAT] [+] EMBL FR0059624 [CGTTCTCAAAGAAATGAGGGAAAAGCCGTCAGGTGAGGACAAAAGCAAACTGGCCTACTGTGTGACAGACACCCCTCCGTGGTACCTTTGCATTGCTTTGTCCATTCAGCATTACCTGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATGCTGCAGGTCACCTTTNGAGNCAGGCTTTCTATCCTACANNNNNNNACATTTTCTTTGCTNACCCCCGCTATGGCAATGTTGTCCATGCCAGAGGGACAATTTCCTGCTTGGCTTTACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_849#0 ---TTACTATGGCTCCAGCGAAGGA-----AAATGGTGGACTTGACAATCTCGCTTTTGA 52 consensus_849#1 CGTTCTCAAAGAAATGAGGGAAAAGCCGTCAGGTGAGGACAAAAGCAAACTGGCCTACTG 60 * * * * ** *** * ** * *** ** ** * consensus_849#0 TATGGACGAAGACATAAAAGACGGGCTCAAAGAAATGAGGGAAAAGCCGTCAGCATTACC 112 consensus_849#1 TGTG-ACAGACACCCCTCCG-TGGTACCTTTGCATTGCTTTGT--CCATTCAGCATTACC 116 * ** ** * ** * ** * * * ** * *********** consensus_849#0 TGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCC 172 consensus_849#1 TGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCC 176 ************************************************************ consensus_849#0 AGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTT 232 consensus_849#1 AGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTT 236 ************************************************************ consensus_849#0 GCACCATGCTGCAGGTCACCTTTGGAGTCAGGCTTCCTATCCTACAGGGGGGTACATTTT 292 consensus_849#1 GCACCATGCTGCAGGTCACCTTTNGAGNCAGGCTTTCTATCCTACANNNNNNNACATTTT 296 *********************** *** ******* ********** ******* consensus_849#0 CTTTGCTGACCCCCGCTATGGCAATGTTGTCCATGCCAGAGTGGGAGTGTCCTGCTTGGA 352 consensus_849#1 CTTTGCTNACCCCCGCTATGGCAATGTTGTCCATGCCAGAGGGACAATTTCCTGCTTGGC 356 ******* ********************************* * * * ********** consensus_849#0 CTTACAATGCCAGTTTGGTTAACGTCTCATCACCAGTCTTTATAGAAGTGTGGCAGAGCC 412 consensus_849#1 TTTACAAT---------------------------------------------------- 364 ******* consensus_849#0 GGATGAGAACTCTGCAGGGCTCCATCATGGTGGCTTCGCTCCTCCAGATCGTGGCCGGCT 472 consensus_849#1 ------------------------------------------------------------ consensus_849#0 TCTCGGGCATGATCGGCTTTCTCATGCGCTTCATAGGACCTTTGACCATTGCTCCCACAA 532 consensus_849#1 ------------------------------------------------------------ consensus_849#0 TCACCCTCATTGGTCTGTCGGTTTATCAAACAGCCGGAGCCAAAGCTGGGAGCCACTGGG 592 consensus_849#1 ------------------------------------------------------------ consensus_849#0 GCATCTCTGCCATGACCACTGCGCTGATCATCCT 626 consensus_849#1 ---------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |