These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GTTTTTTGAACCTGCGCAAGAGGAGTGGCGCCGGCTTTTACTCGCTACAATTCTTTTGCCTGTTTTTTTTTAATGTGCTCCGAGCAGACGGGCTAGAAGTGGATGCCACTTGCTCGGTCAGCCAGTAGGACACAGGTTTACGACAAGACCTTCTGAAATGGGCCTGGTTTTCAGCTGGCTCTGGGGTCGCAGGGCGCTTCCTGGAGTCGCCGCGGAGACGCAGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGA] [+] EMBL CA590212 [GTTTTTTGAACCTGCGCAAGAGGAGTGGCGCCGGCTTTTACTCGCTACAATTCTTTTGCCTGTTTTTTTTTAATGTGCTCCGAGCAGACGGGCTAGAAGTGGATGCCACTTGCTCGGTCAGCCAGTAGGACACAGGTTTACGACAAGACCTTCTGAAATGGGCCTGGTTTTCAGCTGGCTCTGGGGTCGCAGGGCGCTTCCTGGAGTCGCCGCGGAGACGCAGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGA] consensusID : consensus_855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [TCTGCTCCGCTCCGCTCCTCCATCAACGTGCAGCCGAAATGCCCAGCGAGAGGAAGAAGAACAAGCGCCGCATGACCAGGGTGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGAGTATCCCCGGGGGAGGAACCGGCTGCGGACGCAGAGGC] [+] EMBL FR0060346 [TCTGCTCCGCTCCGCTCCTCCATCAACGTGCAGCCGAAATGCCCAGCGAGAGGAAGAAGAACAAGCGCCGCATGACCAGGGTGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGAGTATCCCCGGGGGAGGAACCGGCTGCGGACGCAGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_855#0 GTTTTTTGAACCTGCGCAAGAGGAGTGGCGCCGGCTTTTACTCGCTACAATTCTTTTGCC 60 consensus_855#1 ------------------------------------------------------------ consensus_855#0 TGTTTTTTTTTAATGTGCTCCGAGCAGACGGGCTAGAAGTGGATGCCACTTGCTCGGTCA 120 consensus_855#1 ------------------------------------------------------------ consensus_855#0 GCCAGTAGGACACAGGTTTACGACAAGACCTTCTGAAATGGGCCTGGTTTTCAGCTGGCT 180 consensus_855#1 ----------------TCTGCTCCGCTCCGCTCCTCCATCAACGTGCAGCCGAAATGCCC 44 * * * * * ** ** * ** * ** * consensus_855#0 CTGGGGTCGCAGGGCGCTTCCTGGAGTCGCCGCGGAGACGCAGGTGAGTTCTCCAGCTGA 240 consensus_855#1 AGCGAGAGGAAGAAGA---ACAAGCGCCGC-ATGACCAGGGTGGTGAGTTCTCCAGCTGA 100 * * * ** * * * *** * * * ****************** consensus_855#0 GGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGAC 300 consensus_855#1 GGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGAC 160 ************************************************************ consensus_855#0 AACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGC 360 consensus_855#1 AACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGC 220 ************************************************************ consensus_855#0 CCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCC 420 consensus_855#1 CCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCC 280 ************************************************************ consensus_855#0 CGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGA----------------------- 457 consensus_855#1 CGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGAGTATCCCCGGGGGAGGAACCGGC 340 ************************************* consensus_855#0 --------------- consensus_855#1 TGCGGACGCAGAGGC 355 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |