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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[GCAGGTGAATTGTTATACCCCTAAACTGGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGAAATTACTTGGAGTGATGCTGCCGAGGACTGAGCTGCTGTAGAGAACACATCAGTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATATCACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC]
[+] EMBL CA591054 [GCAGGTGAATTGTTATACCCCTAAACTGGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGAAATTACTTGGAGTGATGCTGCCGAGGACTGAGCTGCTGTAGAGAACACATCAGTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATATCACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC]
consensusID : consensus_863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTTAAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATCCTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT]
[+] EMBL CA590253 [CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTTAAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATCCTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_863#0 -------------------------------GCAGGTGAAT-TGTTATACCCCTAAACT- 27
consensus_863#1 CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTT 60
* ** * * *** * * * **
consensus_863#0 --GGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGA--AATTACTTGGAGTGA-TG 82
consensus_863#1 AAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATC 120
* * * ** * * * * * ** * *** * *** *
consensus_863#0 CTGCCGAG--GACTGAGCTGCTGT-----------AGAGAACACATCAGTGGGTAAGGAA 129
consensus_863#1 CTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAA 180
**** * ** ** * * ** * ** ** ***********
consensus_863#0 CATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATC 189
consensus_863#1 CATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATC 240
************************************************************
consensus_863#0 ATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAG 249
consensus_863#1 ATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAG 300
************************************************************
consensus_863#0 ATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGAC 309
consensus_863#1 ATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGAC 360
************************************************************
consensus_863#0 CTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCT 369
consensus_863#1 CTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCT 420
************************************************************
consensus_863#0 GAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAG 429
consensus_863#1 GAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAG 480
************************************************************
consensus_863#0 CGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTA 489
consensus_863#1 CGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTA 540
************************************************************
consensus_863#0 AAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT 549
consensus_863#1 AAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT 600
************************************************************
consensus_863#0 CACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC 600
consensus_863#1 ---------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |