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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[TCCATTATTGGTCCCATTCAGCTTTAAGCAGACTCAACAACTAAATCACCAAGTTGTTGTGAATAAATGCGGCTGTCATATCTACACTTGGACTCGATCTGAATTTTTTTTCTGTAAGGTTCTGAAGGCTCAGATATCAAATCAAACATGGTTCCTATGAATATGGCGAGTAGCTTCTCCAGGGTTCTGACCTCCAGAAACATCCGGATCCTGTCGCTGTTGGGGGGTTCGGTCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGACGGCCCCACACGGAGGAGGTACCCCGCCAGTGCAGAGTATCCTGACCTGCGGAAGCACAATAACTGTATGGCGAGCAACCTGACACCTGCCATTTACGCCCAGCTGTGCGATAAAACCACGCCCAACGGCTTCACGCTGGACCAGGCCATCCAAACAGGTGTGGATAATCCAGGACACCCCTTCATCAAGACTGTGGGTCTGGTGGCCGGAGATGAAGAGTCCTACGAGGTGTTTGCAGAGCTGATGGATCCAGTCATCAAAGAGCGGCACAATGGTTACGATCCCCGCGGCATGAAACACCCCACCGACCTGGACTCCAGCAAAGNTCACTCTGCC]
[+] EMBL CA590388 [TCCATTATTGGTCCCATTCAGCTTTAAGCAGACTCAACAACTAAATCACCAAGTTGTTGTGAATAAATGCGGCTGTCATATCTACACTTGGACTCGATCTGAATTTTTTTTCTGTAAGGTTCTGAAGGCTCAGATATCAAATCAAACATGGTTCCTATGAATATGGCGAGTAGCTTCTCCAGGGTTCTGACCTCCAGAAACATCCGGATCCTGTCGCTGTTGGGGGGTTCGGTCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGACGGCCCCACACGGAGGAGGTACCCCGCCAGTGCAGAGTATCCTGACCTGCGGAAGCACAATAACTGTATGGCGAGCAACCTGACACCTGCCATTTACGCCCAGCTGTGCGATAAAACCACGCCCAACGGCTTCACGCTGGACCAGGCCATCCAAACAGGTGTGGATAATCCAGGACACCCCTTCATCAAGACTGTGGGTCTGGTGGCCGGAGATGAAGAGTCCTACGAGGTGTTTGCAGAGCTGATGGATCCAGTCATCAAAGAGCGGCACAATGGTTACGATCCCCGCGGCATGAAACACCCCACCGACCTGGACTCCAGCAAAGNTCACTCTGCC]
consensusID : consensus_871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence
[CTTGGACTCGATCTGAATTTGGGTTTTCTGTAAGGTTCTGAAGGCTCAGATATCAAATCAAACATGGTTCCTATGGAACGTTCGATAGAATATGGCGAGTAGCTTCTCCAGGGTTCTGACCTCCAGAAACATCCGGATCCTGTCGCTGTTGGGGGGTTCGGGCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGACGGCCCCACACGGAGGAGGTACCCCGCCAGTGCAGAGTATCCTGACCTGCGGAAGCCCAATAACTGTATGGCGAGCAACCTGACACCTGCCATTTACGCCCAGGTGGGCG]
[+] EMBL FR0060708 [CTTGGACTCGATCTGAATTTGGGTTTTCTGTAAGGTTCTGAAGGCTCAGATATCAAATCAAACATGGTTCCTATGGAACGTTCGATAGAATATGGCGAGTAGCTTCTCCAGGGTTCTGACCTCCAGAAACATCCGGATCCTGTCGCTGTTGGGGGGTTCGGGCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGACGGCCCCACACGGAGGAGGTACCCCGCCAGTGCAGAGTATCCTGACCTGCGGAAGCCCAATAACTGTATGGCGAGCAACCTGACACCTGCCATTTACGCCCAGGTGGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_871#0 TCCATTATTGGTCCCATTCAGCTTTAAGCAGACTCAACAACTAAATCACCAAGTTGTTGT 60
consensus_871#1 ------------------------------------------------------------
consensus_871#0 GAATAAATGCGGCTGTCATATCTACACTTGGACTCGATCTGAATTTT--TTTTCTGTAAG 118
consensus_871#1 --------------------------CTTGGACTCGATCTGAATTTGGGTTTTCTGTAAG 34
******************** ***********
consensus_871#0 GTTCTGAAGGCTCAGATATCAAATCAAACATGGTTCCTATG-------------AATATG 165
consensus_871#1 GTTCTGAAGGCTCAGATATCAAATCAAACATGGTTCCTATGGAACGTTCGATAGAATATG 94
***************************************** ******
consensus_871#0 GCGAGTAGCTTCTCCAGGGTTCTGACCTCCAGAAACATCCGGATCCTGTCGCTGTTGGGG 225
consensus_871#1 GCGAGTAGCTTCTCCAGGGTTCTGACCTCCAGAAACATCCGGATCCTGTCGCTGTTGGGG 154
************************************************************
consensus_871#0 GGTTCGGTCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGACGGCCCCACA 285
consensus_871#1 GGTTCGGGCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGACGGCCCCACA 214
******* ****************************************************
consensus_871#0 CGGAGGAGGTACCCCGCCAGTGCAGAGTATCCTGACCTGCGGAAGCACAATAACTGTATG 345
consensus_871#1 CGGAGGAGGTACCCCGCCAGTGCAGAGTATCCTGACCTGCGGAAGCCCAATAACTGTATG 274
********************************************** *************
consensus_871#0 GCGAGCAACCTGACACCTGCCATTTACGCCCAGCTGTGCGATAAAACCACGCCCAACGGC 405
consensus_871#1 GCGAGCAACCTGACACCTGCCATTTACGCCCAGGTGGGCG-------------------- 314
********************************* ** ***
consensus_871#0 TTCACGCTGGACCAGGCCATCCAAACAGGTGTGGATAATCCAGGACACCCCTTCATCAAG 465
consensus_871#1 ------------------------------------------------------------
consensus_871#0 ACTGTGGGTCTGGTGGCCGGAGATGAAGAGTCCTACGAGGTGTTTGCAGAGCTGATGGAT 525
consensus_871#1 ------------------------------------------------------------
consensus_871#0 CCAGTCATCAAAGAGCGGCACAATGGTTACGATCCCCGCGGCATGAAACACCCCACCGAC 585
consensus_871#1 ------------------------------------------------------------
consensus_871#0 CTGGACTCCAGCAAAGNTCACTCTGCC 612
consensus_871#1 ---------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |