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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[ACCAGGGCTAGCAGACGTTAGCCAGCGAGGTGAGCCATGAGGAGAAGGTTCTTAAAGTCCCGCTTCTCTCTGGGGATTGTTATTGTCTGTCTCATGGGGTTGCTGTCCAGCCTCGGTTGGTACTTATCTGGTAACAAGAAGAATCACACAGCTCCTGGAAGACAGGAAGTCCCCCAGCAGTCGGTCGAACTGTGCTCAGGTTGCAGGGAGATCACTGACCAGGTCAACAGGTTGTATGCTCAAACCTTGGAGAAGAAGGAGGACAAGTCCAAAATATTCAGCAAGAATCACACAGCTACTGGAAGACAGGAGGTCCCCCAGCAGGTGGCCGACCTGTGCTCAGGTTGCAGGGAGATCATTGACAAGGTCAACAGGTTGTATGCTCAAACCTGGGAGAAGAAGGAGGACAAGTACAAAAAATTCAGGTCTGAGCTGAGCAGCAAGTGTCAGGGGTTTGAGAAGGCCATCATTACGCAGGCCAACACCGTGGTGGGATCTAAAATTGTGTATGATGGGGAAAGAAAAAGCTTGGTCCAGGTGACCCCGGAGATGTTCAACACCTTTCCAAAGGAACATCCTTTCCCAAATAAAACATGGGAAACGTGCGCTGTTGTCGGCAACGGTGGGA]
[+] EMBL CA590898 [ACCAGGGCTAGCAGACGTTAGCCAGCGAGGTGAGCCATGAGGAGAAGGTTCTTAAAGTCCCGCTTCTCTCTGGGGATTGTTATTGTCTGTCTCATGGGGTTGCTGTCCAGCCTCGGTTGGTACTTATCTGGTAACAAGAAGAATCACACAGCTCCTGGAAGACAGGAAGTCCCCCAGCAGTCGGTCGAACTGTGCTCAGGTTGCAGGGAGATCACTGACCAGGTCAACAGGTTGTATGCTCAAACCTTGGAGAAGAAGGAGGACAAGTCCAAAATATTCAGCAAGAATCACACAGCTACTGGAAGACAGGAGGTCCCCCAGCAGGTGGCCGACCTGTGCTCAGGTTGCAGGGAGATCATTGACAAGGTCAACAGGTTGTATGCTCAAACCTGGGAGAAGAAGGAGGACAAGTACAAAAAATTCAGGTCTGAGCTGAGCAGCAAGTGTCAGGGGTTTGAGAAGGCCATCATTACGCAGGCCAACACCGTGGTGGGATCTAAAATTGTGTATGATGGGGAAAGAAAAAGCTTGGTCCAGGTGACCCCGGAGATGTTCAACACCTTTCCAAAGGAACATCCTTTCCCAAATAAAACATGGGAAACGTGCGCTGTTGTCGGCAACGGTGGGA]
consensusID : consensus_884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[TGTGGCCACTGTGTGTGAGAGCACAGAACTGGGAGGCCGACATGCTTCTATTCAGCGCCGGGAACCGTTCTGGCTCCATTCCTGTTCACCCTCTACACCTCAGACTTCACCTACAGCCCCTCAACCTGCCACCCCCAGAACCTCTGTGATGACTCTGTGATCCTCAGCCTCATCACTGACAGAGTTGATAAGGAGTGGTGGACTGGTGTCTGCAGAACCAAGGAGATGTTGATATACTTCAGGAGGCAAAAACATGCTCCACCTGCTCTGATGAGCATCCAGGGAAGAATCACACAGCTCCTGGAAGACAGGAAGTCCCCCAGCAGTCGGTCGAACTGTGCTCAGGTTGCAGGGAGATCACTGACCAGGTCAACAGGTTGTATGCTCAAACCTTGGAGAAGAAGGAGGACAAGTCCAAAATATTCAGCAAGAATCACACAGCCTACTGGAAGACAGGAGGTCCCCCAGCAGGTGGGCGACCTGTGGCTCAGGTGCAGGGAGATCATTGACCAGGCCAACAGGTTGTATGCTCCAAACCTGGGAGAAGAAGGAGGACAAGTACCAAAAATTCAGCCTGAAGCTGAACACCAAGTGAAAAGGGGTTTGAGAAGGCCA]
[+] EMBL CA590544 [TGTGGCCACTGTGTGTGAGAGCACAGAACTGGGAGGCCGACATGCTTCTATTCAGCGCCGGGAACCGTTCTGGCTCCATTCCTGTTCACCCTCTACACCTCAGACTTCACCTACAGCCCCTCAACCTGCCACCCCCAGAACCTCTGTGATGACTCTGTGATCCTCAGCCTCATCACTGACAGAGTTGATAAGGAGTGGTGGACTGGTGTCTGCAGAACCAAGGAGATGTTGATATACTTCAGGAGGCAAAAACATGCTCCACCTGCTCTGATGAGCATCCAGGGAAGAATCACACAGCTCCTGGAAGACAGGAAGTCCCCCAGCAGTCGGTCGAACTGTGCTCAGGTTGCAGGGAGATCACTGACCAGGTCAACAGGTTGTATGCTCAAACCTTGGAGAAGAAGGAGGACAAGTCCAAAATATTCAGCAAGAATCACACAGCCTACTGGAAGACAGGAGGTCCCCCAGCAGGTGGGCGACCTGTGGCTCAGGTGCAGGGAGATCATTGACCAGGCCAACAGGTTGTATGCTCCAAACCTGGGAGAAGAAGGAGGACAAGTACCAAAAATTCAGCCTGAAGCTGAACACCAAGTGAAAAGGGGTTTGAGAAGGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_884#0 ------------------------------------------------------------
consensus_884#1 TGTGGCCACTGTGTGTGAGAGCACAGAACTGGGAGGCCGACATGCTTCTATTCAGCGCCG 60
consensus_884#0 ------------------------------------------------------------
consensus_884#1 GGAACCGTTCTGGCTCCATTCCTGTTCACCCTCTACACCTCAGACTTCACCTACAGCCCC 120
consensus_884#0 -------ACCAGGGCTAGCAGACGTTAGCCAGCGAGGTGAGCCATGAGGAGAAGGTTCTT 53
consensus_884#1 TCAACCTGCCACCCCCAGAACCTCTGTGATGACTCTGTGATCCTCAGCCTCATCACTGAC 180
*** * ** * * * * **** ** * *
consensus_884#0 AAAGTCCCGCTTCTCTCTGG-GGATTGTTATTGTCTGTCTCATGGGGTTGCTGTCCAGCC 112
consensus_884#1 AGAGT--TGATAAGGAGTGGTGGACTGGTGTCTGCAGAACCAAGGAGATGTTGATATACT 238
* *** * * *** *** ** * * * * ** ** * ** ** *
consensus_884#0 TCGGTTGGTA--------------CTTATCTGGTAACAA------GAAGAATCACACAGC 152
consensus_884#1 TCAGGAGGCAAAAACATGCTCCACCTGCTCTGATGAGCATCCAGGGAAGAATCACACAGC 298
** * ** * ** **** * * * ***************
consensus_884#0 TCCTGGAAGACAGGAAGTCCCCCAGCAGTCGGTCGAACTGTGCTCAGGTTGCAGGGAGAT 212
consensus_884#1 TCCTGGAAGACAGGAAGTCCCCCAGCAGTCGGTCGAACTGTGCTCAGGTTGCAGGGAGAT 358
************************************************************
consensus_884#0 CACTGACCAGGTCAACAGGTTGTATGCTCAAACCTTGGAGAAGAAGGAGGACAAGTCCAA 272
consensus_884#1 CACTGACCAGGTCAACAGGTTGTATGCTCAAACCTTGGAGAAGAAGGAGGACAAGTCCAA 418
************************************************************
consensus_884#0 AATATTCAGCAAGAATCACACAGC-TACTGGAAGACAGGAGGTCCCCCAGCAGGTGGCCG 331
consensus_884#1 AATATTCAGCAAGAATCACACAGCCTACTGGAAGACAGGAGGTCCCCCAGCAGGTGGGCG 478
************************ ******************************** **
consensus_884#0 ACCTGTGCTCAGGTTGCAGGGAGATCATTGACAAGGTCAACAGGTTGTATGCTC-AAACC 390
consensus_884#1 ACCTGTGGCTCAGGTGCAGGGAGATCATTGACCAGGCCAACAGGTTGTATGCTCCAAACC 538
******* * ****************** *** ***************** *****
consensus_884#0 TGGGAGAAGAAGGAGGACAAGTACAAAAAATTCAGGTCTGAGCTGAGCAGCAAGTGTCA- 449
consensus_884#1 TGGGAGAAGAAGGAGGACAAGTACCAAAAATTCAGCCTGAAGCTGAACACCAAGTGAAAA 598
************************ ********** ****** ** ****** *
consensus_884#0 GGGGTTTGAGAAGGCCATCATTACGCAGGCCAACACCGTGGTGGGATCTAAAATTGTGTA 509
consensus_884#1 GGGGTTTGAGAAGGCCA------------------------------------------- 615
*****************
consensus_884#0 TGATGGGGAAAGAAAAAGCTTGGTCCAGGTGACCCCGGAGATGTTCAACACCTTTCCAAA 569
consensus_884#1 ------------------------------------------------------------
consensus_884#0 GGAACATCCTTTCCCAAATAAAACATGGGAAACGTGCGCTGTTGTCGGCAACGGTGGGA 628
consensus_884#1 -----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |