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Takifugu rubripes
cluster # 888 cluster # 888       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_888#0 length = 461 sequences # 1  
 consensus_888#1 length = 428 sequences # 1  
consensusID : consensus_888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence 
                              [GAGAAGGATTGCCTTCTAATTTCCTCTGAAGAAAAGGGAAAATAACAGCTGGCCGGACCTTTCGCCCACCGTCGCAGACATTTTAAACGTAGGCTGGTGGGCCACCGCGGCGACATGGTCAATATTGCAACAGTTGCTGGTCAGCATCACGTTCCCTAATTTCCTGGACGCAGCCTCGCCACATGCCACCAGCATGTTGTTAGCAACAGTTGTAGGAGCTGTTGAACGCTCATTCGTCTTCAGAGGATTTAATGTGTGCGCGCAGGGCGTCACGCTACACCAAGCAGGAGCCGGAGTCGTTTTATGTCAAGGTTCTATCACGGGAAGCATCCGTGGGTTTTTGGTTGGGGAGTGAGCTAATGAAGCTAGCAAAGCTAGCAAAGCTTAGATAAAAAGGTGTTGACAGTGCGTCTTGATGTATGAAGCGCTGCACTTTTGGCTTCAGTGTGAGTTTCATAGGA]

[+] EMBL CA590611             [GAGAAGGATTGCCTTCTAATTTCCTCTGAAGAAAAGGGAAAATAACAGCTGGCCGGACCTTTCGCCCACCGTCGCAGACATTTTAAACGTAGGCTGGTGGGCCACCGCGGCGACATGGTCAATATTGCAACAGTTGCTGGTCAGCATCACGTTCCCTAATTTCCTGGACGCAGCCTCGCCACATGCCACCAGCATGTTGTTAGCAACAGTTGTAGGAGCTGTTGAACGCTCATTCGTCTTCAGAGGATTTAATGTGTGCGCGCAGGGCGTCACGCTACACCAAGCAGGAGCCGGAGTCGTTTTATGTCAAGGTTCTATCACGGGAAGCATCCGTGGGTTTTTGGTTGGGGAGTGAGCTAATGAAGCTAGCAAAGCTAGCAAAGCTTAGATAAAAAGGTGTTGACAGTGCGTCTTGATGTATGAAGCGCTGCACTTTTGGCTTCAGTGTGAGTTTCATAGGA]




>consensus_888#0
GAGAAGGATTGCCTTCTAATTTCCTCTGAAGAAAAGGGAAAATAACAGCTGGCCGGACCT
TTCGCCCACCGTCGCAGACATTTTAAACGTAGGCTGGTGGGCCACCGCGGCGACATGGTC
AATATTGCAACAGTTGCTGGTCAGCATCACGTTCCCTAATTTCCTGGACGCAGCCTCGCC
ACATGCCACCAGCATGTTGTTAGCAACAGTTGTAGGAGCTGTTGAACGCTCATTCGTCTT
CAGAGGATTTAATGTGTGCGCGCAGGGCGTCACGCTACACCAAGCAGGAGCCGGAGTCGT
TTTATGTCAAGGTTCTATCACGGGAAGCATCCGTGGGTTTTTGGTTGGGGAGTGAGCTAA
TGAAGCTAGCAAAGCTAGCAAAGCTTAGATAAAAAGGTGTTGACAGTGCGTCTTGATGTA
TGAAGCGCTGCACTTTTGGCTTCAGTGTGAGTTTCATAGGA

consensusID : consensus_888#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence 
                              [AGCTGGCCGGACCTTTCGGTCAGGAGGAGAACGGGACCATGTGCAGCCACTGTAAACACACGCAGGATGTTCAGCTCTTCTCCCTTCTGATATGAATTCTCTTTTCCTTCCCCCCTTCAGCCCACCGTCGCAGACATTTTAAACGTAGGCTGGTGGGCCACCGCGGCGACATGGACAATATTGCAACAGTTGCTGGTCAGCATCACGTTCCCTAATTTCCTGGACGCAGCCTCGCCACATGCCACCAGCATGTTGTTAGCAACAGTTGTAGGAGCTGTTGAACGCTCATTCGTCTTCAGAGGATTTAATGTGTGCGCGCAGGGCGCCACGCTACACCAAGCAGGAGCCGGAGGTGTTTTATGGCAAGGTTCTATCACGGGAAGCATCCGGGGGTTTTTGGGTGGGGAGTGAACTTAATGAAGCTAGCA]

[+] EMBL FR0060815            [AGCTGGCCGGACCTTTCGGTCAGGAGGAGAACGGGACCATGTGCAGCCACTGTAAACACACGCAGGATGTTCAGCTCTTCTCCCTTCTGATATGAATTCTCTTTTCCTTCCCCCCTTCAGCCCACCGTCGCAGACATTTTAAACGTAGGCTGGTGGGCCACCGCGGCGACATGGACAATATTGCAACAGTTGCTGGTCAGCATCACGTTCCCTAATTTCCTGGACGCAGCCTCGCCACATGCCACCAGCATGTTGTTAGCAACAGTTGTAGGAGCTGTTGAACGCTCATTCGTCTTCAGAGGATTTAATGTGTGCGCGCAGGGCGCCACGCTACACCAAGCAGGAGCCGGAGGTGTTTTATGGCAAGGTTCTATCACGGGAAGCATCCGGGGGTTTTTGGGTGGGGAGTGAACTTAATGAAGCTAGCA]




>consensus_888#1
AGCTGGCCGGACCTTTCGGTCAGGAGGAGAACGGGACCATGTGCAGCCACTGTAAACACA
CGCAGGATGTTCAGCTCTTCTCCCTTCTGATATGAATTCTCTTTTCCTTCCCCCCTTCAG
CCCACCGTCGCAGACATTTTAAACGTAGGCTGGTGGGCCACCGCGGCGACATGGACAATA
TTGCAACAGTTGCTGGTCAGCATCACGTTCCCTAATTTCCTGGACGCAGCCTCGCCACAT
GCCACCAGCATGTTGTTAGCAACAGTTGTAGGAGCTGTTGAACGCTCATTCGTCTTCAGA
GGATTTAATGTGTGCGCGCAGGGCGCCACGCTACACCAAGCAGGAGCCGGAGGTGTTTTA
TGGCAAGGTTCTATCACGGGAAGCATCCGGGGGTTTTTGGGTGGGGAGTGAACTTAATGA
AGCTAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_888#0      --------------------------------------------------------GAGA 4
consensus_888#1      AGCTGGCCGGACCTTTCGGTCAGGAGGAGAACGGGACCATGTGCAGCCACTGTAAACACA 60
                                                                              * *

consensus_888#0      AGGATTGCCTTCTAATTTCCTCTGAAGAAAAGGGAAAATAACAGCTGGCCGGACCTTTCG 64
consensus_888#1      CGCAGGATGTTCAGCTCTTCTCCCTTCTGATATGAATTCTCTTTTCCTTCCCCCCTTCAG 120
                      * *     ***   * * ***       *   ***             *   ****  *

consensus_888#0      CCCACCGTCGCAGACATTTTAAACGTAGGCTGGTGGGCCACCGCGGCGACATGGTCAATA 124
consensus_888#1      CCCACCGTCGCAGACATTTTAAACGTAGGCTGGTGGGCCACCGCGGCGACATGGACAATA 180
                     ****************************************************** *****

consensus_888#0      TTGCAACAGTTGCTGGTCAGCATCACGTTCCCTAATTTCCTGGACGCAGCCTCGCCACAT 184
consensus_888#1      TTGCAACAGTTGCTGGTCAGCATCACGTTCCCTAATTTCCTGGACGCAGCCTCGCCACAT 240
                     ************************************************************

consensus_888#0      GCCACCAGCATGTTGTTAGCAACAGTTGTAGGAGCTGTTGAACGCTCATTCGTCTTCAGA 244
consensus_888#1      GCCACCAGCATGTTGTTAGCAACAGTTGTAGGAGCTGTTGAACGCTCATTCGTCTTCAGA 300
                     ************************************************************

consensus_888#0      GGATTTAATGTGTGCGCGCAGGGCGTCACGCTACACCAAGCAGGAGCCGGAGTCGTTTTA 304
consensus_888#1      GGATTTAATGTGTGCGCGCAGGGCGCCACGCTACACCAAGCAGGAGCCGGAGGTGTTTTA 360
                     ************************* **************************  ******

consensus_888#0      TGTCAAGGTTCTATCACGGGAAGCATCCGTGGGTTTTTGGTTGGGGAGTGAGCT-AATGA 363
consensus_888#1      TGGCAAGGTTCTATCACGGGAAGCATCCGGGGGTTTTTGGGTGGGGAGTGAACTTAATGA 420
                     ** ************************** ********** ********** ** *****

consensus_888#0      AGCTAGCAAAGCTAGCAAAGCTTAGATAAAAAGGTGTTGACAGTGCGTCTTGATGTATGA 423
consensus_888#1      AGCTAGCA---------------------------------------------------- 428
                     ********                                                    

consensus_888#0      AGCGCTGCACTTTTGGCTTCAGTGTGAGTTTCATAGGA 461
consensus_888#1      --------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)