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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_90#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[AGTCCGAAAAACGGTCTCCTATATTCAAAAACATTGTTTTACGTTGTAAAATTCAGCGTTCGTCTTGATGTCTGGTGCGAATGAAGATATTTTTGACAGCATTGTGGTAGCAGAAGAAAGTTTCCGAGGGGAAGGATACAGGGAGGGCTTTGACAGAGGGACCCATCTAGGACTGCAGGACGGACGCAGACATGGAGTCAGTCATGGCGCAAAGTTGTCCTCTGAGGTTTCCTTCTATTATGGGTTTGCTATCACATGGAAATGTCTACTCCAACTGAATAACGATGTGAAGTCAAGGAAGCATTTGAAAATCCTGGAGGCTTTTCTGGGCTTGATCCAAGGTTGTCCTCATGAAGATCAACCCGAAACACTAACAGAGGATATTAAAAAACTTCGTGCCAAGTTCAGACAGGTCTGCTCTATCCTGGGTGTTTCTAGCGACCTGAAAGCCTTCATGAAGATTTCTGAAGCAATGTCTTTTTGAAAACCTGAGATGATCTAAACTGATTCCTTGACCAAAAATAAATAAAAAGTAGGTGGATGAGCACCAGAAATACATCAGGATTTTTGCTTATTGCAAGTTACATCCAAGTAAGTCATTCTGCCCA]
[+] EMBL CA591092 [AGTCCGAAAAACGGTCTCCTATATTCAAAAACATTGTTTTACGTTGTAAAATTCAGCGTTCGTCTTGATGTCTGGTGCGAATGAAGATATTTTTGACAGCATTGTGGTAGCAGAAGAAAGTTTCCGAGGGGAAGGATACAGGGAGGGCTTTGACAGAGGGACCCATCTAGGACTGCAGGACGGACGCAGACATGGAGTCAGTCATGGCGCAAAGTTGTCCTCTGAGGTTTCCTTCTATTATGGGTTTGCTATCACATGGAAATGTCTACTCCAACTGAATAACGATGTGAAGTCAAGGAAGCATTTGAAAATCCTGGAGGCTTTTCTGGGCTTGATCCAAGGTTGTCCTCATGAAGATCAACCCGAAACACTAACAGAGGATATTAAAAAACTTCGTGCCAAGTTCAGACAGGTCTGCTCTATCCTGGGTGTTTCTAGCGACCTGAAAGCCTTCATGAAGATTTCTGAAGCAATGTCTTTTTGAAAACCTGAGATGATCTAAACTGATTCCTTGACCAAAAATAAATAAAAAGTAGGTGGATGAGCACCAGAAATACATCAGGATTTTTGCTTATTGCAAGTTACATCCAAGTAAGTCATTCTGCCCA]
consensusID : consensus_90#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[CCCCAGTACAGTTTTATTCATTTAAAGTTAACAGAATAAACAGCAATATCAAAGATGCTTAAAAGGACAAGTATGGTACAGTGAAACTGAATTCTTTTTGTCTTTTCAGCACTCTGCATGGTCATTAATTCCATTACAATTATGTAGCTCACTTTCAGGTTGTCCAAGCACCTGAGGGTCAGCAAACAGTAGCAGTTGAAGGAGATCGTAACAGCATCCTGTGCACATTCACTTATACACACAAGTTTACATAATCATGTACATTTTATGTGCACACTCGCATTGTTTCGTATTCATTGTCAGTTAGAACTAGAAAAATAACCCACCTCTACAGCCAAGCTCAGTGGGCAGAATGACTTACTTGGATGTAACTTGCAATAAGCAAAAAT]
[+] EMBL CA329236 [CCCCAGTACAGTTTTATTCATTTAAAGTTAACAGAATAAACAGCAATATCAAAGATGCTTAAAAGGACAAGTATGGTACAGTGAAACTGAATTCTTTTTGTCTTTTCAGCACTCTGCATGGTCATTAATTCCATTACAATTATGTAGCTCACTTTCAGGTTGTCCAAGCACCTGAGGGTCAGCAAACAGTAGCAGTTGAAGGAGATCGTAACAGCATCCTGTGCACATTCACTTATACACACAAGTTTACATAATCATGTACATTTTATGTGCACACTCGCATTGTTTCGTATTCATTGTCAGTTAGAACTAGAAAAATAACCCACCTCTACAGCCAAGCTCAGTGGGCAGAATGACTTACTTGGATGTAACTTGCAATAAGCAAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_90#0 AGTCCGAAAAACGGTCTCCTATATTCAAAAACATTGTTTTACGTTGTAAAATTCAGCGTT 60
consensus_90#1 ------------------------------------------------------------
consensus_90#0 CGTCTTGATGTCTGGTGCGAATGAAGATATTTTTGACAGCATTGTGGTAGCAGAAGAAAG 120
consensus_90#1 ------------------------------------------------------------
consensus_90#0 TTTCCGAGGGGAAGGATACAGGGAGGGCTTTGACAGAGGGACCCATCTAGGACTGCAGGA 180
consensus_90#1 ------------------------------------------------------------
consensus_90#0 CGGACGCAGACATGGAGTCAGTCATGGCGCAAAGTTGTCCTCTGAGGTTTCCTTCTATTA 240
consensus_90#1 ------------------------------------CCCCAGTACAGTTTTATTCATTTA 24
** * **** *** ***
consensus_90#0 TGGGTTTGCTATCACATGGAAATGTCTACTCCAACTGAATAACGATGTGAAGTCAAGGAA 300
consensus_90#1 AAGTTAACAGAATAAACAGCAATATCAAAGATGCTTAAAAGGACAAGTATGGTACAGTGA 84
* * * * * * *** ** * * ** * ** ** ** *
consensus_90#0 GCATTTGAAAATCCTGGAGGCTTTTCTGGGCTTGATCCAAGGTTGTCCTCATGAAGATCA 360
consensus_90#1 AACT---GAATTCTTTTTGTCTTTTCAGCACTC--TGCATGGTCATTAATTCCATTACAA 139
* ** ** * * ****** * ** * ** *** * * * *
consensus_90#0 ACCCGAAACACTAACAGAGGATATTAAAAAACTTCGTGCCAAGTTCAGACAGGTCTGCTC 420
consensus_90#1 TTATGTAGCTCACTTTCAGGTTGTCCAAGCACCTGAGGGTCAG--CAAACAGTAGCAGTT 197
* * * * *** * * ** ** * * ** ** **** *
consensus_90#0 TATCCTGGGTGTTTCTAGCGACCTGAAAGCCTTCATGAAGATTTCTGAAGCAATGTCTTT 480
consensus_90#1 GAAGGAGATCGTAAC-AGCATCCTGTGCACATTCACTTATACACACAAGTTTACATAATC 256
* * ** * *** **** * **** * * * * * *
consensus_90#0 TTGAAAACCTGAGATG---ATCTAAACTGATTCCTTGACCAAAAATAAATAAAAAGTAGG 537
consensus_90#1 ATGTACATTTTATGTGCACACTCGCATTGTTTCGT--ATTCATTGTCAGTTAGAACTAGA 314
** * * * * ** * * ** *** * * * * * * * ** ***
consensus_90#0 TGGATGAGCACCAGAAATACATCAGGATTTTTGCTTATTGCAAGTTACATCCAAGTAAGT 597
consensus_90#1 AAAATAACCCACCTCTACA-GCCAAGCTCAGTGGGCAGAATGACTTACTTGGATGTAACT 373
** * * * * * ** * * ** * * **** * * **** *
consensus_90#0 CATTCTGCCCA----- 608
consensus_90#1 TGCAATAAGCAAAAAT 389
* **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |