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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTACCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGCTAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGCGATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAGG]
[+] EMBL CA591025 [TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTACCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGCTAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGCGATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAGG]
consensusID : consensus_910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCCCTGCTGATCTCCACACACTGAGCACAGCGACACGCGTTCACACCCCCCCAACAATGCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG]
[+] EMBL CA591397 [ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCCCTGCTGATCTCCACACACTGAGCACAGCGACACGCGTTCACACCCCCCCAACAATGCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_910#0 TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTA 60
consensus_910#1 ------------------------------------------------------------
consensus_910#0 CCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGC 120
consensus_910#1 ----------------ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCC 44
* * * *** * **** ** * *
consensus_910#0 TAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGC 180
consensus_910#1 CTGC--TGATCTCCA---CACACTGAGCACAGCGACACGC---GTTCACACCCCCCCAAC 96
** ** * * * * * * * *** * * ** ** *
consensus_910#0 GATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTC 240
consensus_910#1 AAT--GCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTC 154
** * * *** * * *************** *********************
consensus_910#0 GTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGAT 300
consensus_910#1 GTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGAT 214
************************************************************
consensus_910#0 GCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGC 360
consensus_910#1 GCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGC 274
********************************************************* **
consensus_910#0 TCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTC 420
consensus_910#1 TCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTC 334
************************************************************
consensus_910#0 TTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGAC 480
consensus_910#1 TTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGAC 394
******************************** ***************************
consensus_910#0 TGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACG 540
consensus_910#1 TGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACG 454
***************************** ******************************
consensus_910#0 CCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAG 600
consensus_910#1 CCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAG 514
******************************************************* ****
consensus_910#0 G-------------------------------- 601
consensus_910#1 GGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG 547
*
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |