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Takifugu rubripes
cluster # 910 cluster # 910       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_910#0 length = 601 sequences # 1  
consensus_910#1 length = 547 sequences # 1  

consensusID : consensus_910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTACCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGCTAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGCGATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAGG]

[+] EMBL CA591025             [TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTACCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGCTAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGCGATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAGG]


>consensus_910#0 TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTA CCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGC TAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGC GATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTC GTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGAT GCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGC TCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTC TTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGAC TGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACG CCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAG G



consensusID : consensus_910#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence
                              [ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCCCTGCTGATCTCCACACACTGAGCACAGCGACACGCGTTCACACCCCCCCAACAATGCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG]

[+] EMBL CA591397             [ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCCCTGCTGATCTCCACACACTGAGCACAGCGACACGCGTTCACACCCCCCCAACAATGCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG]


>consensus_910#1 ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCCCTGCTGATCTCCACAC ACTGAGCACAGCGACACGCGTTCACACCCCCCCAACAATGCGTCGAAGGTGTGTCTGTTA CCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCA GTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATA TCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGCTCACAGCCCCGGCCTGATGATGTCTC AGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACA GCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCT GCAGGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCC GCTATCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCAGTCCAGGAGGAGCGCCAGA GGAACCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_910#0      TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTA 60
consensus_910#1      ------------------------------------------------------------
                                                                                 

consensus_910#0      CCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGC 120
consensus_910#1      ----------------ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCC 44
                                      *     *   * ***         * ****   **   *   *

consensus_910#0      TAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGC 180
consensus_910#1      CTGC--TGATCTCCA---CACACTGAGCACAGCGACACGC---GTTCACACCCCCCCAAC 96
                       **  ** * *  *   *   *   *  *  ***    *   * **       **   *

consensus_910#0      GATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTC 240
consensus_910#1      AAT--GCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTC 154
                      **   * *   ***    * * *************** *********************

consensus_910#0      GTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGAT 300
consensus_910#1      GTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGAT 214
                     ************************************************************

consensus_910#0      GCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGC 360
consensus_910#1      GCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGC 274
                     ********************************************************* **

consensus_910#0      TCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTC 420
consensus_910#1      TCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTC 334
                     ************************************************************

consensus_910#0      TTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGAC 480
consensus_910#1      TTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGAC 394
                     ******************************** ***************************

consensus_910#0      TGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACG 540
consensus_910#1      TGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACG 454
                     ***************************** ******************************

consensus_910#0      CCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAG 600
consensus_910#1      CCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAG 514
                     ******************************************************* ****

consensus_910#0      G-------------------------------- 601
consensus_910#1      GGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG 547
                     *                                




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)