These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTACCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGCTAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGCGATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAGG] [+] EMBL CA591025 [TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTACCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGCTAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGCGATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAGG] consensusID : consensus_910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCCCTGCTGATCTCCACACACTGAGCACAGCGACACGCGTTCACACCCCCCCAACAATGCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG] [+] EMBL CA591397 [ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCCCTGCTGATCTCCACACACTGAGCACAGCGACACGCGTTCACACCCCCCCAACAATGCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTCGTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGATGCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGCTCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTCTTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGACTGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_910#0 TTTAGTCAACAATTACTGCTTCGGACTATCACCGGGAGCCGTGCACAAATGCTAATGCTA 60 consensus_910#1 ------------------------------------------------------------ consensus_910#0 CCAAAGCATTAGCTTTGCTCGCCTTTTGCAAAGTTAGCCGTAATGTCCAGCTAAAGCTGC 120 consensus_910#1 ----------------ACCAAGTTGAAGTAAATCGGATTTAAGTGTCGCCCTCTCGTCCC 44 * * * *** * **** ** * * consensus_910#0 TAGCTCTGGTTTATAAGACGTTCCATGGCCGTCGAATTACCCAGCTCTTCGTTTCCTGGC 180 consensus_910#1 CTGC--TGATCTCCA---CACACTGAGCACAGCGACACGC---GTTCACACCCCCCCAAC 96 ** ** * * * * * * * *** * * ** ** * consensus_910#0 GATTAACCTTCTAGGCACATATTTTACCAGCTCCTCGCTTAAATCGCCTGTCTCGGCCTC 240 consensus_910#1 AAT--GCGTCGAAGGTGTGTCTGTTACCAGCTCCTCGCATAAATCGCCTGTCTCGGCCTC 154 ** * * *** * * *************** ********************* consensus_910#0 GTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGAT 300 consensus_910#1 GTTGGGATTCGGATCCATCAGCACCAGTCAGATCTCTTCATCCACGCCACCGTCAGGGAT 214 ************************************************************ consensus_910#0 GCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCAGC 360 consensus_910#1 GCACTCAATTAGCAGCTCGGAAGATATCAAGCCTCCCTTCGGCTTGAGGCCCGTGCCGGC 274 ********************************************************* ** consensus_910#0 TCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTC 420 consensus_910#1 TCACAGCCCCGGCCTGATGATGTCTCAGAAGCGCATGTGTGTCATTTGCGGGGACCGTTC 334 ************************************************************ consensus_910#0 TTCTGGGAAACACTACGGCGTTTACAGCTGCGAGGGCTGTAAAGGTTTCTTTAAAAGGAC 480 consensus_910#1 TTCTGGGAAACACTACGGCGTTTACAGCTGCGGGGGCTGTAAAGGTTTCTTTAAAAGGAC 394 ******************************** *************************** consensus_910#0 TGTGCGCAAAGACCTGAGCTACACCTGCANGGACAACAAAGAGTGTCTGGTGGACAAACG 540 consensus_910#1 TGTGCGCAAAGACCTGAGCTACACCTGCAGGGACAACAAAGAGTGTCTGGTGGACAAACG 454 ***************************** ****************************** consensus_910#0 CCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGGAGAG 600 consensus_910#1 CCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGCATGAAGAG 514 ******************************************************* **** consensus_910#0 G-------------------------------- 601 consensus_910#1 GGAAGCAGTCCAGGAGGAGCGCCAGAGGAACCG 547 * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |