These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CAGTTTTTGGACGAGTCGATGTTTATCTCCTTCGCATAATCGGTCCCACACCGACGAGTCACACCGAGCTCCATCTGTCCCCCCTGGGTTCGCTCATTTCCGGGTAGTCCGGCTGCTCCAGGCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACTCTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTTCTTCCCTCTGGAGACGGCCAAAAGCAGGCTGCAGGTGGATGAGAAGCGGAAATCTAAAACTACACCCGTCATTCTGGCTGAGATAGCAAAGGAAGAAGGCCTTCTGTCTCTGTACAGAGGCTGGTTGCCCGTCATCTCCAGCCTTTGTTGCTCCAACTTTGTCTACTTCTACACCTTCAACACACTGAAAAAGCTGATGATATCTGGTCCAAATGGGTCCAGACCCAGCAAAGATCTGCTAATTGGGATTGTATCAGGGGCCGTGAACGTGATCCTCACTACTCCCATGCGGGTGGTCAACACTCGACTGAAGCTCCAGGGGGCCAAGTTCAGAAATGAAGACCTTCATCAGACCCACTATACAGGCATATTTGATGCGTTCACTCAGATTATA] [+] EMBL CA591084 [CAGTTTTTGGACGAGTCGATGTTTATCTCCTTCGCATAATCGGTCCCACACCGACGAGTCACACCGAGCTCCATCTGTCCCCCCTGGGTTCGCTCATTTCCGGGTAGTCCGGCTGCTCCAGGCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACTCTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTTCTTCCCTCTGGAGACGGCCAAAAGCAGGCTGCAGGTGGATGAGAAGCGGAAATCTAAAACTACACCCGTCATTCTGGCTGAGATAGCAAAGGAAGAAGGCCTTCTGTCTCTGTACAGAGGCTGGTTGCCCGTCATCTCCAGCCTTTGTTGCTCCAACTTTGTCTACTTCTACACCTTCAACACACTGAAAAAGCTGATGATATCTGGTCCAAATGGGTCCAGACCCAGCAAAGATCTGCTAATTGGGATTGTATCAGGGGCCGTGAACGTGATCCTCACTACTCCCATGCGGGTGGTCAACACTCGACTGAAGCTCCAGGGGGCCAAGTTCAGAAATGAAGACCTTCATCAGACCCACTATACAGGCATATTTGATGCGTTCACTCAGATTATA] consensusID : consensus_914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CCCACACCGACGAGTCACACCGAGCTCCATCTGTCCCCCCTGGGGTGGCTCATTTCCGGGTAGTCCGGCTGCTCCAGCCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACTCTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTCCTTCCCTCTGGAGACGGCCAAAAGCAGGCTGCAGGGTTTGTTATTCAGCATGCTGCCAGGTACATCGTGATACAGCTACATTTTATCTACACGGGGCTATTTTTCTAACCGAAGCATTAACTCTAGGATTAGGGGATGAGAAGCGGAAATCTAAAACTACACCCGGCATTCTGGCTGAGATAGCAAAAGGAAGAAGGCCTT] [+] EMBL FR0059398 [CCCACACCGACGAGTCACACCGAGCTCCATCTGTCCCCCCTGGGGTGGCTCATTTCCGGGTAGTCCGGCTGCTCCAGCCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACTCTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTCCTTCCCTCTGGAGACGGCCAAAAGCAGGCTGCAGGGTTTGTTATTCAGCATGCTGCCAGGTACATCGTGATACAGCTACATTTTATCTACACGGGGCTATTTTTCTAACCGAAGCATTAACTCTAGGATTAGGGGATGAGAAGCGGAAATCTAAAACTACACCCGGCATTCTGGCTGAGATAGCAAAAGGAAGAAGGCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_914#0 CAGTTTTTGGACGAGTCGATGTTTATCTCCTTCGCATAATCGGTCCCACACCGACGAGTC 60 consensus_914#1 --------------------------------------------CCCACACCGACGAGTC 16 **************** consensus_914#0 ACACCGAGCTCCATCTGTCCCCCCTGGGTTCGCTCATTTCCGGGTAGTCCGGCTGCTCCA 120 consensus_914#1 ACACCGAGCTCCATCTGTCCCCCCTGGGGTGGCTCATTTCCGGGTAGTCCGGCTGCTCCA 76 **************************** * ***************************** consensus_914#0 GGCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACT 180 consensus_914#1 GCCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACT 136 * ********************************************************** consensus_914#0 CTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTTCTTCCCT 240 consensus_914#1 CTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTCCTTCCCT 196 **************************************************** ******* consensus_914#0 CTGGAGACGGCCAAAAGCAGGCTGCAGGTGGATGAGAAGCGGAAATCTAA-AACTACACC 299 consensus_914#1 CTGGAGACGGCCAAAAGCAGGCTGCAGG-GTTTGTTATTCAGCATGCTGCCAGGTACATC 255 **************************** * ** * * * * ** * **** * consensus_914#0 CGTCATTCTGGCTGAGATAGCAAAGGAAGAAGGCCTTCTGTCTCTGTACAGAGGCTGGTT 359 consensus_914#1 -GTGATAC-AGCT-ACATTTTATCTACACGGGGCTATTTTTCTA---ACCGAAGC----- 304 ** ** * *** * ** * * *** * * *** ** ** ** consensus_914#0 GCCCGTCATCTCCAGCCTTTGTTGCTCCAACTTTG---TCTACTTCTACACCTTCAACAC 416 consensus_914#1 ----ATTAACTCTAGGATTAGGGGATGAGAAGCGGAAATCTAAAACTACACC--CGGCAT 358 * * *** ** ** * * * * * **** ******* * ** consensus_914#0 ACTGAAAAAGCTGATGATATCTGGTCCAAATGGGTCCAGACCCAGCAAAGATCTGCTAAT 476 consensus_914#1 TCTG-----GCTGA-GATAGCAAAAGGAAGAAGGCCTT---------------------- 390 *** ***** **** * ** ** * consensus_914#0 TGGGATTGTATCAGGGGCCGTGAACGTGATCCTCACTACTCCCATGCGGGTGGTCAACAC 536 consensus_914#1 ------------------------------------------------------------ consensus_914#0 TCGACTGAAGCTCCAGGGGGCCAAGTTCAGAAATGAAGACCTTCATCAGACCCACTATAC 596 consensus_914#1 ------------------------------------------------------------ consensus_914#0 AGGCATATTTGATGCGTTCACTCAGATTATA 627 consensus_914#1 ------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |