cluster # 928

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 928 cluster # 928 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_928#0 length = 340 sequences # 1

consensus_928#1 length = 206 sequences # 1

consensusID : consensus_928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [GATATCTTTGCCAGCTCTTAGTGGGTCTAGTGGACGCACTTTCGGAGGCCCCAGCGCCTCTCCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGGAGAGAATCTCGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTCTGCTTTAAGACGACAGCAAGCTTCCAGGAAAAGCAGAGAAACAAAGACCAAGGGTCGTACGTCACAGAGGGTGTCTAAAGCATCAGAAGCAATATCGAAAAAAGAATGTGTCCAAAAGAAGCCAGTGGTTTTTGAGCTCCCCAAACTGAAGAGTTAGTACGGAGC]

[+] EMBL FR0062209            [GATATCTTTGCCAGCTCTTAGTGGGTCTAGTGGACGCACTTTCGGAGGCCCCAGCGCCTCTCCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGGAGAGAATCTCGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTCTGCTTTAAGACGACAGCAAGCTTCCAGGAAAAGCAGAGAAACAAAGACCAAGGGTCGTACGTCACAGAGGGTGTCTAAAGCATCAGAAGCAATATCGAAAAAAGAATGTGTCCAAAAGAAGCCAGTGGTTTTTGAGCTCCCCAAACTGAAGAGTTAGTACGGAGC]




>consensus_928#0
GATATCTTTGCCAGCTCTTAGTGGGTCTAGTGGACGCACTTTCGGAGGCCCCAGCGCCTC
TCCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGG
AGAGAATCTCGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTCTGCTT
TAAGACGACAGCAAGCTTCCAGGAAAAGCAGAGAAACAAAGACCAAGGGTCGTACGTCAC
AGAGGGTGTCTAAAGCATCAGAAGCAATATCGAAAAAAGAATGTGTCCAAAAGAAGCCAG
TGGTTTTTGAGCTCCCCAAACTGAAGAGTTAGTACGGAGC

consensusID : consensus_928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [AATCAGTGCCAGGTGGGGGGAGGGTCTACTGAACCACACCCGGAGGCCCCACCTCCTCTGCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGAAGAGAATCTTGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTTTGCTTTAAGACGACAGCAAGCTTCCAGGAAAAG]

[+] EMBL FR0062150            [AATCAGTGCCAGGTGGGGGGAGGGTCTACTGAACCACACCCGGAGGCCCCACCTCCTCTGCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGAAGAGAATCTTGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTTTGCTTTAAGACGACAGCAAGCTTCCAGGAAAAG]




>consensus_928#1
AATCAGTGCCAGGTGGGGGGAGGGTCTACTGAACCACACCCGGAGGCCCCACCTCCTCTG
CCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGAAG
AGAATCTTGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTTTGCTTTA
AGACGACAGCAAGCTTCCAGGAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_928#0      GATATCTTTGCCAGCTCTTAGT-GGGTCTAGTGGACGCACTTTCGGAGGCCCCAGCGCCT 59
consensus_928#1      --AATCAGTGCCAGGTGGGGGGAGGGTCTACTGAAC-CACACCCGGAGGCCCCACCTCCT 57
                        ***  ****** *    *  ******* ** ** ***   *********** * ***

consensus_928#0      CTCCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTG 119
consensus_928#1      CTGCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTG 117
                     ** *********************************************************

consensus_928#0      GAGAGAATCTCGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTCTGCT 179
consensus_928#1      AAGAGAATCTTGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTTTGCT 177
                      ********* ******************************************** ****

consensus_928#0      TTAAGACGACAGCAAGCTTCCAGGAAAAGCAGAGAAACAAAGACCAAGGGTCGTACGTCA 239
consensus_928#1      TTAAGACGACAGCAAGCTTCCAGGAAAAG------------------------------- 206
                     *****************************                               

consensus_928#0      CAGAGGGTGTCTAAAGCATCAGAAGCAATATCGAAAAAAGAATGTGTCCAAAAGAAGCCA 299
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      GTGGTTTTTGAGCTCCCCAAACTGAAGAGTTAGTACGGAGC 340
consensus_928#1      -----------------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)