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Takifugu rubripes
cluster # 934 cluster # 934       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_934#0 length = 604 sequences # 1  
 consensus_934#1 length = 290 sequences # 1  
consensusID : consensus_934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence 
                              [ACAGATGCGAGAGATCTGAAGATGACCACCATCATGACCCCGATGGTCCTCTTCCTGCTCTTCCTCTCTTTGACAGCCATCCCTCCAGTAAGTCTGACATCTAGTTGTTTTTTGTTTGTTTTTTTTGGATAGTAAATTGTTTAATATTTCAGCCAACACTCAAAATAAAATGTAAAACTGTGCTGTTCTGTTAAAGAGCGCAGCTCAAGAGAAACTTGGAGATGATGGTAATATTGAAGATTCATTTGGTTTACGTCTTACAGGAGACTATTTTTATTACATTTTACAATTTGTTTACTCAATCTTCTGATTTCTGTTTGACCCAGACGAGTCTGTTGACATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGTTACGTCCGGATCCCCTACGTTATCTCTTCTTCATACTCCAGCAGAGAGCGCAGCAACATTATTGGGGGCATGAACATTTTCAACCGCTACACGTGTGTCCGATTCTTTCCGAAGAGGGGGTGGGACTTCTTC]

[+] EMBL CA591277             [ACAGATGCGAGAGATCTGAAGATGACCACCATCATGACCCCGATGGTCCTCTTCCTGCTCTTCCTCTCTTTGACAGCCATCCCTCCAGTAAGTCTGACATCTAGTTGTTTTTTGTTTGTTTTTTTTGGATAGTAAATTGTTTAATATTTCAGCCAACACTCAAAATAAAATGTAAAACTGTGCTGTTCTGTTAAAGAGCGCAGCTCAAGAGAAACTTGGAGATGATGGTAATATTGAAGATTCATTTGGTTTACGTCTTACAGGAGACTATTTTTATTACATTTTACAATTTGTTTACTCAATCTTCTGATTTCTGTTTGACCCAGACGAGTCTGTTGACATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGTTACGTCCGGATCCCCTACGTTATCTCTTCTTCATACTCCAGCAGAGAGCGCAGCAACATTATTGGGGGCATGAACATTTTCAACCGCTACACGTGTGTCCGATTCTTTCCGAAGAGGGGGTGGGACTTCTTC]




>consensus_934#0
ACAGATGCGAGAGATCTGAAGATGACCACCATCATGACCCCGATGGTCCTCTTCCTGCTC
TTCCTCTCTTTGACAGCCATCCCTCCAGTAAGTCTGACATCTAGTTGTTTTTTGTTTGTT
TTTTTTGGATAGTAAATTGTTTAATATTTCAGCCAACACTCAAAATAAAATGTAAAACTG
TGCTGTTCTGTTAAAGAGCGCAGCTCAAGAGAAACTTGGAGATGATGGTAATATTGAAGA
TTCATTTGGTTTACGTCTTACAGGAGACTATTTTTATTACATTTTACAATTTGTTTACTC
AATCTTCTGATTTCTGTTTGACCCAGACGAGTCTGTTGACATCTCTGCCATCATCTCCGA
AGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAG
GAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGTTACGTCCG
GATCCCCTACGTTATCTCTTCTTCATACTCCAGCAGAGAGCGCAGCAACATTATTGGGGG
CATGAACATTTTCAACCGCTACACGTGTGTCCGATTCTTTCCGAAGAGGGGGTGGGACTT
CTTC

consensusID : consensus_934#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence 
                              [ACAGCCATCCCTCCAAGCGCAGCTCAAGAGAAACTTGGAGATGATGACGAGTCTGTTGACATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGGTACGTCCGGATCCCCTACGGTATCTCCTCTTCATACTCCAGCAGAGAGCGCAGCACCCATTATTGGGNGCCATGAACATTTTCAAACCGCTACACGGG]

[+] EMBL FR0058942            [ACAGCCATCCCTCCAAGCGCAGCTCAAGAGAAACTTGGAGATGATGACGAGTCTGTTGACATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGGTACGTCCGGATCCCCTACGGTATCTCCTCTTCATACTCCAGCAGAGAGCGCAGCACCCATTATTGGGNGCCATGAACATTTTCAAACCGCTACACGGG]




>consensus_934#1
ACAGCCATCCCTCCAAGCGCAGCTCAAGAGAAACTTGGAGATGATGACGAGTCTGTTGAC
ATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGAT
GTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGA
ACATCTCGAGGGTACGTCCGGATCCCCTACGGTATCTCCTCTTCATACTCCAGCAGAGAG
CGCAGCACCCATTATTGGGNGCCATGAACATTTTCAAACCGCTACACGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_934#0      ACAGATGCGAGAGATCTGAAGATGACCACCATCATGACCCCGATGGTCCTCTTCCTGCTC 60
consensus_934#1      ------------------------------------------------------------
                                                                                 

consensus_934#0      TTCCTCTCTTTGACAGCCATCCCTCCAGTAAGTCTGACATCTAGTTGTTTTTTGTTTGTT 120
consensus_934#1      ------------------------------------------------------------
                                                                                 

consensus_934#0      TTTTTTGGATAGTAAATTGTTTAATATTTCAGCCAACACTCAAAATAAAATGTAAAACTG 180
consensus_934#1      ------------------------------------------------------------
                                                                                 

consensus_934#0      TGCTGTTCTGTTAAAGAGCGCAGCTCAAGAGAAACTTGGAGATGATGGTAATATTGAAGA 240
consensus_934#1      ------------------------------------------------------------
                                                                                 

consensus_934#0      TTCATTTGGTTTACGTCTTACAGGAGACTATTTTTATTACATTTTACAATTTGTTTA--C 298
consensus_934#1      ------------------------------------------ACAGCCATCCCTCCAAGC 18
                                                                   * **   *  *  *

consensus_934#0      TCAATCTTCTGATTTCTGTTTGACCCAGACGAGTCTGTTGACATCTCTGCCATCATCTCC 358
consensus_934#1      GCAGCTCAAGAGAAACTTGGAGATGATGACGAGTCTGTTGACATCTCTGCCATCATCTCC 78
                      **            **    **    *********************************

consensus_934#0      GAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAA 418
consensus_934#1      GAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAA 138
                     ************************************************************

consensus_934#0      AGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGTTACGTC 478
consensus_934#1      AGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGGTACGTC 198
                     ***************************************************** ******

consensus_934#0      CGGATCCCCTACGTTATCTCTTCTTCATACTCCAGCAGAGAGCGCAGCAAC-ATTATTGG 537
consensus_934#1      CGGATCCCCTACGGTATCTCCTCTTCATACTCCAGCAGAGAGCGCAGCACCCATTATTGG 258
                     ************* ****** **************************** * ********

consensus_934#0      GGGC-ATGAACATTTTCAA-CCGCTACACGTGTGTCCGATTCTTTCCGAAGAGGGGGTGG 595
consensus_934#1      GNGCCATGAACATTTTCAAACCGCTACACGGG---------------------------- 290
                     * ** ************** ********** *                            

consensus_934#0      GACTTCTTC 604
consensus_934#1      ---------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)