These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACCAATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTAATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCACGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATGCCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTACCGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGTAATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAGGCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCCCGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCCAAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACATTTTCTTG] [+] EMBL CA844651 [TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACCAATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTAATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCACGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATGCCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTACCGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGTAATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAGGCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCCCGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCCAAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACATTTTCTTG] consensusID : consensus_979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 64 fasta sequence [TGAATTTAATGTTAAACTAAATATTCGATTCTACATTCTCTTGTTAATAAAGTTGGATAAAAGA] [+] EMBL CA846415 [TGAATTTAATGTTAAACTAAATATTCGATTCTACATTCTCTTGTTAATAAAGTTGGATAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_979#0 TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACC 60 consensus_979#1 ------------------------------------------------------------ consensus_979#0 AATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTA 120 consensus_979#1 ------------------------------------------------------------ consensus_979#0 ATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCA 180 consensus_979#1 ------------------------------------------------------------ consensus_979#0 CGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATG 240 consensus_979#1 ------------------------------------------------------------ consensus_979#0 CCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTAC 300 consensus_979#1 ------------------------------------------------------------ consensus_979#0 CGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGT 360 consensus_979#1 ------------------------------------------------------------ consensus_979#0 AATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAG 420 consensus_979#1 ------------------------------------------------------------ consensus_979#0 GCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCC 480 consensus_979#1 ------------------------------------------------------------ consensus_979#0 CGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCC 540 consensus_979#1 ------------------------------------------------------------ consensus_979#0 AAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACAT 600 consensus_979#1 ------------------------TGAATTTAATGTTAAACTAAATATTCGATTCTACAT 36 ************************************ consensus_979#0 TTTCTTG--------------------- 607 consensus_979#1 TCTCTTGTTAATAAAGTTGGATAAAAGA 64 * ***** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |