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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACCAATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTAATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCACGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATGCCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTACCGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGTAATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAGGCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCCCGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCCAAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACATTTTCTTG]
[+] EMBL CA844651 [TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACCAATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTAATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCACGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATGCCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTACCGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGTAATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAGGCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCCCGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCCAAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACATTTTCTTG]
consensusID : consensus_979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 64 fasta sequence
[TGAATTTAATGTTAAACTAAATATTCGATTCTACATTCTCTTGTTAATAAAGTTGGATAAAAGA]
[+] EMBL CA846415 [TGAATTTAATGTTAAACTAAATATTCGATTCTACATTCTCTTGTTAATAAAGTTGGATAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_979#0 TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACC 60
consensus_979#1 ------------------------------------------------------------
consensus_979#0 AATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTA 120
consensus_979#1 ------------------------------------------------------------
consensus_979#0 ATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCA 180
consensus_979#1 ------------------------------------------------------------
consensus_979#0 CGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATG 240
consensus_979#1 ------------------------------------------------------------
consensus_979#0 CCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTAC 300
consensus_979#1 ------------------------------------------------------------
consensus_979#0 CGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGT 360
consensus_979#1 ------------------------------------------------------------
consensus_979#0 AATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAG 420
consensus_979#1 ------------------------------------------------------------
consensus_979#0 GCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCC 480
consensus_979#1 ------------------------------------------------------------
consensus_979#0 CGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCC 540
consensus_979#1 ------------------------------------------------------------
consensus_979#0 AAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACAT 600
consensus_979#1 ------------------------TGAATTTAATGTTAAACTAAATATTCGATTCTACAT 36
************************************
consensus_979#0 TTTCTTG--------------------- 607
consensus_979#1 TCTCTTGTTAATAAAGTTGGATAAAAGA 64
* *****
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |