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Takifugu rubripes
cluster # 979 cluster # 979       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_979#0 length = 607 sequences # 1  
consensus_979#1 length = 64 sequences # 1  

consensusID : consensus_979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence
                              [TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACCAATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTAATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCACGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATGCCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTACCGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGTAATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAGGCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCCCGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCCAAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACATTTTCTTG]

[+] EMBL CA844651             [TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACCAATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTAATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCACGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATGCCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTACCGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGTAATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAGGCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCCCGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCCAAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACATTTTCTTG]


>consensus_979#0 TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACC AATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTA ATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCA CGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATG CCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTAC CGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGT AATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAG GCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCC CGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCC AAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACAT TTTCTTG



consensusID : consensus_979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 64
fasta sequence
                              [TGAATTTAATGTTAAACTAAATATTCGATTCTACATTCTCTTGTTAATAAAGTTGGATAAAAGA]

[+] EMBL CA846415             [TGAATTTAATGTTAAACTAAATATTCGATTCTACATTCTCTTGTTAATAAAGTTGGATAAAAGA]


>consensus_979#1 TGAATTTAATGTTAAACTAAATATTCGATTCTACATTCTCTTGTTAATAAAGTTGGATAA AAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_979#0      TTGGCATCCAGCGCCTTGCGCTGTGGCAAGAAGAAGGTCTGGCTGGATCCAAATGAAACC 60
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      AATGAGATTGCCAATGCAAACTCTCGCCAACAGATCCGAAAATTGGTCAAGGATGGGCTA 120
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      ATCATCAGAAAACCCGTGACGGTTCACTCCCGCGCTCGCTGCCGCAAGAACACATTGGCA 180
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      CGGCGTAAAGGTCGTCACATGGGATATGGTAAGAGGAAGGGCACAGCCAATGCTCGTATG 240
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      CCAGAGAAACTGACATGGATGCGGCGCATGAGAATCCTGCGTCGTCTGCTTCGTCGCTAC 300
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      CGTGAGTCGAAGAAAATTGACAGGCACATGTATCACAGTTTATATTTGAAGGCCAAAGGT 360
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      AATGTCTTCAAAAACAAACGCATTCTGATGGAGCACATTCACAAACTGAAGGCAGATAAG 420
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      GCTCGCAAGAAGCTTCTGGCTGACCAGGCGGAGGCTCGCCGCTCAAAGACAAAAGAGGCC 480
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      CGCAAGCGCAGAGAAGAGCGTCTTCTGGCCAAGAAAGAAGAAATCATCAAGAACTTGTCC 540
consensus_979#1      ------------------------------------------------------------
                                                                                 

consensus_979#0      AAAGAGGAGGAAACTGCAAAGAAGTGAATTTAATGTTAAACTAAATATTCGATTCTACAT 600
consensus_979#1      ------------------------TGAATTTAATGTTAAACTAAATATTCGATTCTACAT 36
                                             ************************************

consensus_979#0      TTTCTTG--------------------- 607
consensus_979#1      TCTCTTGTTAATAAAGTTGGATAAAAGA 64
                     * *****                     




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)