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Takifugu rubripes
cluster # 995 cluster # 995       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_995#0 length = 541 sequences # 1  
 consensus_995#1 length = 358 sequences # 1  
consensusID : consensus_995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence 
                              [CTCTGGAAACGCCGCCATCATGTCGACAGCTTTGGAAGCCACCGGGTTCATCATGTGCATCATCAGCTGGCTGGTAACTGGAGCGGCGCTGGTCAACGACTACTGGAAGATCTCCACCGTGTCTGGAAGCGTCATCATTTCTCTGAGGCAGTTTGAGAACTTGTGGCACTCCTGCGCCGAAAACAGCGCCGGCATCGCCGAGTGTCGAGACTTCGAGTCCCTGCTCGCCCTGCCAAGTCACGTGCAGGCGTGTCGCGCTCTGATGATCATCTCGCTGCTTTTCGGACTCGCCGCCATGATCGTCGCTCTGCTGGGACTCAAGTGCATCAAGATCGGTTCGACCACCGAGGAGTCCAAGGCCAAGATCGCGGGTACCGGAGGCATCCTGAGCGTGCTGGGAGGTCTCTGCTGTATCATCGCCGTCTCCTGGTACGCCTACAGGGTGGTGCAGGACTTCTACGACCCGTTCTCCGGCGGCATGAAGTCAGTGTCCGCACACACCGCGGCCATGGTGCTGCTCACTCACACCTTCTCACCTTTC]

[+] EMBL CA844953             [CTCTGGAAACGCCGCCATCATGTCGACAGCTTTGGAAGCCACCGGGTTCATCATGTGCATCATCAGCTGGCTGGTAACTGGAGCGGCGCTGGTCAACGACTACTGGAAGATCTCCACCGTGTCTGGAAGCGTCATCATTTCTCTGAGGCAGTTTGAGAACTTGTGGCACTCCTGCGCCGAAAACAGCGCCGGCATCGCCGAGTGTCGAGACTTCGAGTCCCTGCTCGCCCTGCCAAGTCACGTGCAGGCGTGTCGCGCTCTGATGATCATCTCGCTGCTTTTCGGACTCGCCGCCATGATCGTCGCTCTGCTGGGACTCAAGTGCATCAAGATCGGTTCGACCACCGAGGAGTCCAAGGCCAAGATCGCGGGTACCGGAGGCATCCTGAGCGTGCTGGGAGGTCTCTGCTGTATCATCGCCGTCTCCTGGTACGCCTACAGGGTGGTGCAGGACTTCTACGACCCGTTCTCCGGCGGCATGAAGTCAGTGTCCGCACACACCGCGGCCATGGTGCTGCTCACTCACACCTTCTCACCTTTC]




>consensus_995#0
CTCTGGAAACGCCGCCATCATGTCGACAGCTTTGGAAGCCACCGGGTTCATCATGTGCAT
CATCAGCTGGCTGGTAACTGGAGCGGCGCTGGTCAACGACTACTGGAAGATCTCCACCGT
GTCTGGAAGCGTCATCATTTCTCTGAGGCAGTTTGAGAACTTGTGGCACTCCTGCGCCGA
AAACAGCGCCGGCATCGCCGAGTGTCGAGACTTCGAGTCCCTGCTCGCCCTGCCAAGTCA
CGTGCAGGCGTGTCGCGCTCTGATGATCATCTCGCTGCTTTTCGGACTCGCCGCCATGAT
CGTCGCTCTGCTGGGACTCAAGTGCATCAAGATCGGTTCGACCACCGAGGAGTCCAAGGC
CAAGATCGCGGGTACCGGAGGCATCCTGAGCGTGCTGGGAGGTCTCTGCTGTATCATCGC
CGTCTCCTGGTACGCCTACAGGGTGGTGCAGGACTTCTACGACCCGTTCTCCGGCGGCAT
GAAGTCAGTGTCCGCACACACCGCGGCCATGGTGCTGCTCACTCACACCTTCTCACCTTT
C

consensusID : consensus_995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence 
                              [CGGTTCGACCACCGAGGAGTCCAAGGCCAAGATCGCGGGTACCGGAGGCATCCTGAGCGTGCTGGGAGGTCTCTGCTGTATCATCGCCGTCTCCTGGTACGCCTACAGGGTGGTGCAGGACTTCTACGACCCGTTCTCCGGCGGCATGAAGTTTGAGCTGGGGACGGGGCTGTTCCTGGGATGGGGCGGAGCCGCTCTGAGTGTGCTGGGCGGAGGCCTCCTGTGCTCCGCCTGTAGGAGAGCGTCACCTCAAGGAAAGAAAGGCGGTTACTATGGAAACGCCCCAGCGAAGGTCTACACGGCCACAGCCAAGTCTGATGCCAACTCAGGACGAGCGTACGTCTGAAGCGTGACCCGT]

[+] EMBL FR0056863            [CGGTTCGACCACCGAGGAGTCCAAGGCCAAGATCGCGGGTACCGGAGGCATCCTGAGCGTGCTGGGAGGTCTCTGCTGTATCATCGCCGTCTCCTGGTACGCCTACAGGGTGGTGCAGGACTTCTACGACCCGTTCTCCGGCGGCATGAAGTTTGAGCTGGGGACGGGGCTGTTCCTGGGATGGGGCGGAGCCGCTCTGAGTGTGCTGGGCGGAGGCCTCCTGTGCTCCGCCTGTAGGAGAGCGTCACCTCAAGGAAAGAAAGGCGGTTACTATGGAAACGCCCCAGCGAAGGTCTACACGGCCACAGCCAAGTCTGATGCCAACTCAGGACGAGCGTACGTCTGAAGCGTGACCCGT]




>consensus_995#1
CGGTTCGACCACCGAGGAGTCCAAGGCCAAGATCGCGGGTACCGGAGGCATCCTGAGCGT
GCTGGGAGGTCTCTGCTGTATCATCGCCGTCTCCTGGTACGCCTACAGGGTGGTGCAGGA
CTTCTACGACCCGTTCTCCGGCGGCATGAAGTTTGAGCTGGGGACGGGGCTGTTCCTGGG
ATGGGGCGGAGCCGCTCTGAGTGTGCTGGGCGGAGGCCTCCTGTGCTCCGCCTGTAGGAG
AGCGTCACCTCAAGGAAAGAAAGGCGGTTACTATGGAAACGCCCCAGCGAAGGTCTACAC
GGCCACAGCCAAGTCTGATGCCAACTCAGGACGAGCGTACGTCTGAAGCGTGACCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_995#0      CTCTGGAAACGCCGCCATCATGTCGACAGCTTTGGAAGCCACCGGGTTCATCATGTGCAT 60
consensus_995#1      ------------------CGGTTCGACCACCGAGGAGTCCAAGGCCAAGATCGCGGGTAC 42
                                       *   *****  *   ***  ***  *     ***  * * * 

consensus_995#0      CATCAGCTGGCTGGTAACTGGAGCGGCGCTGGTCAACGACTACTGGAAGATCTCCACCGT 120
consensus_995#1      C--------GGAGGCATCCTGAGCG-TGCTGGGAGGTCTCTGCTGT---ATCATCGCCGT 90
                     *        *  ** * *  *****  *****       ** ***    ***  * ****

consensus_995#0      GTCTGGAAGCGTCATCATTTCTCTGAGGCAGTTTGAGAACTTGTGGCACTCCTGCGCCGA 180
consensus_995#1      CTCCTGGTACGCCTACAGGGTGGTGCAGGACTTCTACGACCCGTTCTCCGGCGGCAT-GA 149
                      **  *   ** *  **      **  * * **  *  **  **    *  * **   **

consensus_995#0      AAACAGCGCCGGCATCGCCGAGTGTCGAGACTTCGAGTCCCTGCTCGCCCTGCCAAGTCA 240
consensus_995#1      AGTTTGAGCTGGGGACGG-GGCTGTTCCTGGGATGGGGCGGAGCCGCTCTGAGTGTGCTG 208
                     *    * ** **   **  *  ***         * * *   **    *       *   

consensus_995#0      CGTGCAGGCGTGTCGCGCTCTGATGATCATCTCGCTGCTTTTCGGACTCGCCGCCATGAT 300
consensus_995#1      GGCGGAGGCCTCCTGTGCTCCGCCTGTAGGAGAGCGTCACCTCAAG---GAAAGAAAGGC 265
                      * * **** *   * **** *    *      **  *   **      *     * *  

consensus_995#0      CGTCGCTCTGCTGGGACTCAAGTGCATCAAGATCGGTTCGACCACCGAGGAGTCCAAGGC 360
consensus_995#1      GGTTACTATGGAAACGCCCCAGCG----AAGGTCTACACGGCCACAGCCAAGTCTGATGC 321
                      **  ** **      * * ** *    *** **    ** **** *   ****  * **

consensus_995#0      CAAGATCGCGGGTACCGGAGGCATCCTGAGCGTGCTGGGAGGTCTCTGCTGTATCATCGC 420
consensus_995#1      CAA---CTCAGGACGAGCGTACGTCTGAAGCGTGACCCGT-------------------- 358
                     ***   * * **    *    * **   ******    *                     

consensus_995#0      CGTCTCCTGGTACGCCTACAGGGTGGTGCAGGACTTCTACGACCCGTTCTCCGGCGGCAT 480
consensus_995#1      ------------------------------------------------------------
                                                                                 

consensus_995#0      GAAGTCAGTGTCCGCACACACCGCGGCCATGGTGCTGCTCACTCACACCTTCTCACCTTT 540
consensus_995#1      ------------------------------------------------------------
                                                                                 

consensus_995#0      C 541
consensus_995#1      -


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)