These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGAAAGCCGCGATCGGAGAATCACGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCCGGTGTTGGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGGCAAAAAGAAAGGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGGGCGACAGCCGCAACAAGAAGCAGCGCAATCCGCGGGC] [+] EMBL BM615235 [CCGAAAGCCGCGATCGGAGAATCACGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCCGGTGTTGGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGGCAAAAAGAAAGGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGGGCGACAGCCGCAACAAGAAGCAGCGCAATCCGCGGGC] consensusID : consensus_1008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCCGGTGTTTGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGCAAAAAGAAGGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGGGCGACAGCCGCAACAAGAAGCAGC] [+] EMBL BM651543 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCCGGTGTTTGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGCAAAAAGAAGGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGGGCGACAGCCGCAACAAGAAGCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1008#0 --CCGAAAGCCGCGATCGGAGAATCACGCGCAAAACTCTATTTACTTTGCTATTTTAGTG 58 consensus_1008#1 CCGCCCACGCGTCCGCCCACGCGTCCGGCGCAAAACTCTATTTACTTTGCTATTTTAGTG 60 * * ** * * * ** ********************************* consensus_1008#0 TTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAA 118 consensus_1008#1 TTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAA 120 ************************************************************ consensus_1008#0 CGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTG 178 consensus_1008#1 CGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTG 180 ************************************************************ consensus_1008#0 CCGGTGTTGGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTG 238 consensus_1008#1 CCGGTGTTTGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTG 240 ******** *************************************************** consensus_1008#0 ATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGGCAAAAAGAAA 298 consensus_1008#1 ATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCG-CAAAAAGAA- 298 ************************************************* ********* consensus_1008#0 GGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGG 358 consensus_1008#1 GGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGG 358 ************************************************************ consensus_1008#0 GTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGC 418 consensus_1008#1 GTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGC 418 ************************************************************ consensus_1008#0 CATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCG 478 consensus_1008#1 CATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCG 478 ************************************************************ consensus_1008#0 GCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTC 538 consensus_1008#1 GCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTC 538 ************************************************************ consensus_1008#0 CGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGT 598 consensus_1008#1 CGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGT 598 ************************************************************ consensus_1008#0 GGGCGACAGCCGCAACAAGAAGCAGCGCAATCCGCGGGC 637 consensus_1008#1 GGGCGACAGCCGCAACAAGAAGCAGC------------- 624 ************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||