These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCGATCAGCTCGCAAGGCTGCAGAATCTGAAGGAATCGAACGCATAAGGCGCCGGTGAGAGGACGCGTAGAGTGGACGGTATCAGTGCGCGGGGAGGTATTGTGAGCAGGAGAGGGGACGAGCAGAAGACGGTAGGACACACACACACACACACAATTACACGAAGTAGTTAATTGTTTACCGATGCCGATGCACTGTACAACGGCACCGTTCAAAACCGTTCTGTGGACGTCAGTGGAGAGCCGCGGCCATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATTTTGTGCAAAACTCAATGGTGAATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTCCAAATGGGGTTTTTCGTTGTTGCTGTAAGTCATTGTCATTGTCATTATCGTTGTCGTGTCAGGTATACAGATGTTAGGAGAACGTCGTCCAACGGGATATTTAGTGTACTAATCAAGATCAAAGCTGCTAATGCATTTAGATCCCATACAAATAGCATCACGATTACCACTACTACTACCACTACTTTGCCGTCTGATAAGCGTCAGACGGATGGTTAGGCTTCCTTTGCGACGTGGACCGATGGGGGTTTGCCTTTGTGATAATAATGCATTTTTA] [+] EMBL BM614784 [CCGATCAGCTCGCAAGGCTGCAGAATCTGAAGGAATCGAACGCATAAGGCGCCGGTGAGAGGACGCGTAGAGTGGACGGTATCAGTGCGCGGGGAGGTATTGTGAGCAGGAGAGGGGACGAGCAGAAGACGGTAGGACACACACACACACACACAATTACACGAAGTAGTTAATTGTTTACCGATGCCGATGCACTGTACAACGGCACCGTTCAAAACCGTTCTGTGGACGTCAGTGGAGAGCCGCGGCCATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATTTTGTGCAAAACTCAATGGTGAATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTCCAAATGGGGTTTTTCGTTGTTGCTGTAAGTCATTGTCATTGTCATTATCGTTGTCGTGTCAGGTATACAGATGTTAGGAGAACGTCGTCCAACGGGATATTTAGTGTACTAATCAAGATCAAAGCTGCTAATGCATTTAGATCCCATACAAATAGCATCACGATTACCACTACTACTACCACTACTTTGCCGTCTGATAAGCGTCAGACGGATGGTTAGGCTTCCTTTGCGACGTGGACCGATGGGGGTTTGCCTTTGTGATAATAATGCATTTTTA] consensusID : consensus_1050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [CCGGGCGTTGAGTGGACGGTGTCAGTGCGCGGGAAGGTATTGTGAGCAGGAGAGGGAACGAGCAGAAGATGGGAGGACACACACACACAATTACACGAAGTGGTTAATTGTTTGCCGATGCACTGTACAACTGCACCGTTCAAACCCGTTCTGTGGACGTCAATGGAGAGCCGCGGCTATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATGGTATTTTGTGCAAAACTCAATGGTTCATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTC] [+] EMBL BM652697 [CCGGGCGTTGAGTGGACGGTGTCAGTGCGCGGGAAGGTATTGTGAGCAGGAGAGGGAACGAGCAGAAGATGGGAGGACACACACACACAATTACACGAAGTGGTTAATTGTTTGCCGATGCACTGTACAACTGCACCGTTCAAACCCGTTCTGTGGACGTCAATGGAGAGCCGCGGCTATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTATGGTATTTTGTGCAAAACTCAATGGTTCATGGCAAACGGGGGCCATGTTCGATTGTGAGAGATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1050#0 CCGATCAGCTCGCAAGGCTGCAGAATCTGAAGGAATCGAACGCATAAGGCGCCGGTGAGA 60 consensus_1050#1 ------------------------------------------------------------ consensus_1050#0 GGACGCGTAGAGTGGACGGTATCAGTGCGCGGGGAGGTATTGTGAGCAGGAGAGGGGACG 120 consensus_1050#1 CCGGGCGTTGAGTGGACGGTGTCAGTGCGCGGGAAGGTATTGTGAGCAGGAGAGGGAACG 60 **** *********** ************ ********************** *** consensus_1050#0 AGCAGAAGACGGTAGGACACACACACACACACACAATTACACGAAGTAGTTAATTGTTTA 180 consensus_1050#1 AGCAGAAGATGGGAGGACACACAC------ACACAATTACACGAAGTGGTTAATTGTTT- 113 ********* ** *********** ***************** *********** consensus_1050#0 CCGATGCCGATGCACTGTACAACGGCACCGTTCAAAACCGTTCTGTGGACGTCAGTGGAG 240 consensus_1050#1 -----GCCGATGCACTGTACAACTGCACCGTTCAAACCCGTTCTGTGGACGTCAATGGAG 168 ****************** ************ ***************** ***** consensus_1050#0 AGCCGCGGCCATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTAT 300 consensus_1050#1 AGCCGCGGCTATGCAAATCAAAACTACAATCTGCTGCAACAATCATAATACGTAGGGTAT 228 ********* ************************************************** consensus_1050#0 -----TTTGTGCAAAACTCAATGGTGAATGGCAAACGGGGGCCATGTTCGATTGTGAGAG 355 consensus_1050#1 GGTATTTTGTGCAAAACTCAATGGTTCATGGCAAACGGGGGCCATGTTCGATTGTGAGAG 288 ******************** ********************************* consensus_1050#0 ATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTCCAAA 415 consensus_1050#1 ATTCATTTTTAATCGTTGTATGTGTGAGTGTGTTTGTGTGAATTGGAACGGTCGTC---- 344 ******************************************************** consensus_1050#0 TGGGGTTTTTCGTTGTTGCTGTAAGTCATTGTCATTGTCATTATCGTTGTCGTGTCAGGT 475 consensus_1050#1 ------------------------------------------------------------ consensus_1050#0 ATACAGATGTTAGGAGAACGTCGTCCAACGGGATATTTAGTGTACTAATCAAGATCAAAG 535 consensus_1050#1 ------------------------------------------------------------ consensus_1050#0 CTGCTAATGCATTTAGATCCCATACAAATAGCATCACGATTACCACTACTACTACCACTA 595 consensus_1050#1 ------------------------------------------------------------ consensus_1050#0 CTTTGCCGTCTGATAAGCGTCAGACGGATGGTTAGGCTTCCTTTGCGACGTGGACCGATG 655 consensus_1050#1 ------------------------------------------------------------ consensus_1050#0 GGGGTTTGCCTTTGTGATAATAATGCATTTTTA 688 consensus_1050#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||