cluster # 1053

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Anopheles gambiae
cluster # 1053 cluster # 1053 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1053#0 length = 631 sequences # 1

consensus_1053#1 length = 605 sequences # 1

consensusID : consensus_1053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [GGCAAGAATCGGCACGTGGCTTGAAATGCACTGCACCCTGCAGATCACCGACATTGATCCAGCCGTTGCGGCGTTCCACTTGTTGATCCGTCAGCCCGTCGGTGCGCAGAATCTTTGACTTGAGCCAGGACAGGTAGTAGACGCGGACACGGTTCTTCTTGCCCGAGATGGTCACCAGTATGTTCTGGCCTTCGAGCACCTCCATCTGCTGGAACCGCCGACGGGATATCAGCTGGTACACCTTGCCCTGGCCGGAGCGATCGAGCAACATCAGCCCGTTCTCCGTGCCGATCAGCAAATTGACACCCCACAGGGCCGCGCACAGTATCTCGGAGTTGAAACGCTTCTTGTACTTCCGTATTTCGGGCGTATCACTCGTTGCATCGTGCGACGTCGGCGTCACGTTCACGTTCACGTGACTCTCGCGCCGTGATGCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGGAAGCTGCGCTGCGTTCTCTTCGCTGGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAACGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCCTACTATTCGTCGANGCCGAGCGATGCTTTCTG]

[+] EMBL BX468415             [GGCAAGAATCGGCACGTGGCTTGAAATGCACTGCACCCTGCAGATCACCGACATTGATCCAGCCGTTGCGGCGTTCCACTTGTTGATCCGTCAGCCCGTCGGTGCGCAGAATCTTTGACTTGAGCCAGGACAGGTAGTAGACGCGGACACGGTTCTTCTTGCCCGAGATGGTCACCAGTATGTTCTGGCCTTCGAGCACCTCCATCTGCTGGAACCGCCGACGGGATATCAGCTGGTACACCTTGCCCTGGCCGGAGCGATCGAGCAACATCAGCCCGTTCTCCGTGCCGATCAGCAAATTGACACCCCACAGGGCCGCGCACAGTATCTCGGAGTTGAAACGCTTCTTGTACTTCCGTATTTCGGGCGTATCACTCGTTGCATCGTGCGACGTCGGCGTCACGTTCACGTTCACGTGACTCTCGCGCCGTGATGCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGGAAGCTGCGCTGCGTTCTCTTCGCTGGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAACGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCCTACTATTCGTCGANGCCGAGCGATGCTTTCTG]




>consensus_1053#0
GGCAAGAATCGGCACGTGGCTTGAAATGCACTGCACCCTGCAGATCACCGACATTGATCC
AGCCGTTGCGGCGTTCCACTTGTTGATCCGTCAGCCCGTCGGTGCGCAGAATCTTTGACT
TGAGCCAGGACAGGTAGTAGACGCGGACACGGTTCTTCTTGCCCGAGATGGTCACCAGTA
TGTTCTGGCCTTCGAGCACCTCCATCTGCTGGAACCGCCGACGGGATATCAGCTGGTACA
CCTTGCCCTGGCCGGAGCGATCGAGCAACATCAGCCCGTTCTCCGTGCCGATCAGCAAAT
TGACACCCCACAGGGCCGCGCACAGTATCTCGGAGTTGAAACGCTTCTTGTACTTCCGTA
TTTCGGGCGTATCACTCGTTGCATCGTGCGACGTCGGCGTCACGTTCACGTTCACGTGAC
TCTCGCGCCGTGATGCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGGAAG
CTGCGCTGCGTTCTCTTCGCTGGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAAC
GCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCCT
ACTATTCGTCGANGCCGAGCGATGCTTTCTG

consensusID : consensus_1053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [GCACAGTATCCTNCGGACTTGAAACGCTTTCTTTGNTACCTTCCCGTATTTTCCGGGGCGTATCACCTCGCTTGCATCGTGCGACGTCCGGCCGTCACGTTCACGTTCACGTGACTCTCGCGCCGTGATCCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGAAGCTGCCGCTGCCTTCTCTTCGCTGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAAGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCTACTATTCTCACCCGAGCGATTCTTCTGTTGACCATCAAACAGCAGCGATTGCTGCGGCCGGTTGGGCGAGTTACGTACGAAGATGACGGATTCAGTTTTTTCGCGCCGCGGACGCAAGAAGTCCATGTTGCGCGGTGTCACCTGCGCGCTTGCCAGTGGACTCGGCTGTCGCCCTCCGTTCCCACCTTCCTTTGGTGTGCCAGCACCTCCTCCTCCTGCTCCTCCTCCTACACCTGTTCCTCTTGCACCCCCACCGCCGTCCTGCTGACCGTGGCGTGGTGGAGTCTGTCGTCCACGTGCCGAATTCTTGGCC]

[-] EMBL BX468933             [GCACAGTATCCTNCGGACTTGAAACGCTTTCTTTGNTACCTTCCCGTATTTTCCGGGGCGTATCACCTCGCTTGCATCGTGCGACGTCCGGCCGTCACGTTCACGTTCACGTGACTCTCGCGCCGTGATCCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGAAGCTGCCGCTGCCTTCTCTTCGCTGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAAGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCTACTATTCTCACCCGAGCGATTCTTCTGTTGACCATCAAACAGCAGCGATTGCTGCGGCCGGTTGGGCGAGTTACGTACGAAGATGACGGATTCAGTTTTTTCGCGCCGCGGACGCAAGAAGTCCATGTTGCGCGGTGTCACCTGCGCGCTTGCCAGTGGACTCGGCTGTCGCCCTCCGTTCCCACCTTCCTTTGGTGTGCCAGCACCTCCTCCTCCTGCTCCTCCTCCTACACCTGTTCCTCTTGCACCCCCACCGCCGTCCTGCTGACCGTGGCGTGGTGGAGTCTGTCGTCCACGTGCCGAATTCTTGGCC]




>consensus_1053#1
GCACAGTATCCTNCGGACTTGAAACGCTTTCTTTGNTACCTTCCCGTATTTTCCGGGGCG
TATCACCTCGCTTGCATCGTGCGACGTCCGGCCGTCACGTTCACGTTCACGTGACTCTCG
CGCCGTGATCCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGAAGCTGCCG
CTGCCTTCTCTTCGCTGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAAGCTTGAC
TAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCTACTATTCT
CACCCGAGCGATTCTTCTGTTGACCATCAAACAGCAGCGATTGCTGCGGCCGGTTGGGCG
AGTTACGTACGAAGATGACGGATTCAGTTTTTTCGCGCCGCGGACGCAAGAAGTCCATGT
TGCGCGGTGTCACCTGCGCGCTTGCCAGTGGACTCGGCTGTCGCCCTCCGTTCCCACCTT
CCTTTGGTGTGCCAGCACCTCCTCCTCCTGCTCCTCCTCCTACACCTGTTCCTCTTGCAC
CCCCACCGCCGTCCTGCTGACCGTGGCGTGGTGGAGTCTGTCGTCCACGTGCCGAATTCT
TGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1053#0      GGCAAGAATCGGCACGTGGCTTGAAATGCACTGCACCCTGCAGATCACCGACATTGATCC 60
consensus_1053#1      -GCACAGTATCCTNCG-GACTTGAAACGCTTT---CTTTGNTACCTTCCCGTATTTTCCG 55
                       ***          ** * ******* **  *   *  **       **   ***   * 

consensus_1053#0      AGCCGTTGCGGCGTTCCACTTGT-TGATCCGTCAGCCCGTCGGTGCGCAGAATCTTTGAC 119
consensus_1053#1      GGGCGT---ATCACCTCGCTTGCATCGTGCGACGTCCGGCCGTCACGTTCA--CGTTCAC 110
                       * ***     *    * ****  *  * ** *  ** * **   **   *  * ** **

consensus_1053#0      TTGAGCCAGGACAGGTAGTAGACGCGGAC-ACGGTTCTTCTTGCCCGAGATGGTCACCAG 178
consensus_1053#1      GTGACTCTCGCGCCGTGATCCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAG 170
                       ***  *  *    **  *     **  * ** *  **    ***  **  *  *   **

consensus_1053#0      TATGTTCTGGCCTTCGAGCACCTCCATCTGCTGGAACCGCC--GACGGGATATCA--GCT 234
consensus_1053#1      GAAGCT---GCCGCTGCCTTCTCTTCGCTGGCGGACTTGTCATGTCTGGGAGGCGTCGCC 227
                       * * *   ***   *    *      ***  ***   * *  * * **    *   ** 

consensus_1053#0      GGTACACCTTGCCCTGGCCGGAGCGATCGAGCAACATCAGCCCGTTCTCCGTGCCGATCA 294
consensus_1053#1      GGTGAAGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCG 287
                      ***  * **** *   *  *   **   *  *       *  ** *  *** **  * * 

consensus_1053#0      GCAAATTGACACCCCACAGGGCCGCGCACAGTATCTCGGAGTTGAAAC-GCTTCTTGTAC 353
consensus_1053#1      AGGCTACTATTCTCACCCGAGCGATTC---TTCTGTTGACCATCAAACAGCAGCGATTGC 344
                              *  * *  * * **    *    * * * *    * **** **  *   * *

consensus_1053#0      TTCCGTATTTCGGGCGTATCACTCGTTGCATCGTGCGACGTCGGCGTCACGT-TCACGTT 412
consensus_1053#1      TGCGGCCGGTTGGGCGAGTTACGTACGAAGATGACGGATTCAGTTTTTTCGCGCCGCGGA 404
                      * * *    * *****  * **          *   **    *   *  **   * **  

consensus_1053#0      CACGTGACTCTCGCGCCGTGATGCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGT 472
consensus_1053#1      CGCAAGAAGTCCATGTTGCGCGGTGTC--ACCTGCGCGCTTGC-CAGTGGACTCGGCTGT 461
                      * *  **    *  *  * *  * * *  * *  *  *  **  *     *  **   **

consensus_1053#0      GAGGGAAGCTGCGCTGCGTTCTCTTCGCTGGGCGGACTTGTCATGTCTGGGAGGCGTCGC 532
consensus_1053#1      C--GCCCTCCGTTCCCACCTTCCTTTGGTGTGCCAGCACCTCCTCCTCCTGCTCCTCCTC 519
                         *    * *  *     *  *** * ** **   *   ** *      *   *  * *

consensus_1053#0      CGGTGAACGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCG-GGCGTA 591
consensus_1053#1      CTACACCTGTTCCTCT---TGCACCCC------CACCGCCGTCCTGCTGACCGTGGCGTG 570
                      *       * *   **   *  * **       * * **      **** *** ***** 

consensus_1053#0      CCGAGGCCTACTATTCGTCGANGCCGAGCGATGCTTTCTG 631
consensus_1053#1      GTGGAGTCTGTCGTCCAC--GTGCCGAATTCTTGGCC--- 605
                        *  * **    * *      *****    *