These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence [CAGGCCAGAATTCGGCACGNGTGACGCACTGTGTCAGCGAGCAGGAGCGCACGCGGCAAGGTGGTGCAGCAGGTGGCGCCAAGGGTGCTGCTTCCGCTGTCGCTGAACGGCACGGCCAACGGTGAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCAGCCATCAATCCGGAGGTCGCGTTCCCGGGCCAGCGCAATCTGGAGGTGATCCGGCCTGCTAATGAACCAGCTCCATCCGGACTACACGTCGCTGGAAAACTTCGAAGCACGTGATGGCACTGTGCAATCTGGCCTCGATGAACGAATCCACCCGGCAGCGCATCCTGAAGGAGCAGGGCATGGTGAAGTTCGAATCGTACATGGGCGAGGACCATATGATGCTGCGTCGAGCCGCCACCCAGGTGATGTGCAACATGGTCCAGTCGCCGGACGCGGTGAAGCTGTGCGAAAAGGAGAACGATCGGGTAAAGATGCTGGCGCTGCTGTGCGAGGAAGAGGACGAGGATACGGCGCTGGCGGCATCGGGTGCACTCGCCTATCTGACCTCCGTGTCGGAGCGGTGCTGCGAGAAGATGTTCGAACCGATCGCGTGGCTGGACGTGTTCCACACGTTGGTGGCGAAACCCGAGGCGCCGGTGTGCAGCATCGCGGCACGGTGATCATTCGCAACATCCATCAAGACGAACAAGCAGCTNGCGGTCGAAAGCTAGGTTCCGGACACCGGATTCTNGTGCAGGATNCTGNAACGGNGTTACCGGCAANGGTTAACGAACGAAGNAAGCGCGCGCGAAAGGGCNAATTCGAGTGTTGCCCAGGGAGATGGNCTTGAAACCTTGGCGNA] [+] EMBL BX468466 [CAGGCCAGAATTCGGCACGNGTGACGCACTGTGTCAGCGAGCAGGAGCGCACGCGGCAAGGTGGTGCAGCAGGTGGCGCCAAGGGTGCTGCTTCCGCTGTCGCTGAACGGCACGGCCAACGGTGAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCAGCCATCAATCCGGAGGTCGCGTTCCCGGGCCAGCGCAATCTGGAGGTGATCCGGCCTGCTAATGAACCAGCTCCATCCGGACTACACGTCGCTGGAAAACTTCGAAGCACGTGATGGCACTGTGCAATCTGGCCTCGATGAACGAATCCACCCGGCAGCGCATCCTGAAGGAGCAGGGCATGGTGAAGTTCGAATCGTACATGGGCGAGGACCATATGATGCTGCGTCGAGCCGCCACCCAGGTGATGTGCAACATGGTCCAGTCGCCGGACGCGGTGAAGCTGTGCGAAAAGGAGAACGATCGGGTAAAGATGCTGGCGCTGCTGTGCGAGGAAGAGGACGAGGATACGGCGCTGGCGGCATCGGGTGCACTCGCCTATCTGACCTCCGTGTCGGAGCGGTGCTGCGAGAAGATGTTCGAACCGATCGCGTGGCTGGACGTGTTCCACACGTTGGTGGCGAAACCCGAGGCGCCGGTGTGCAGCATCGCGGCACGGTGATCATTCGCAACATCCATCAAGACGAACAAGCAGCTNGCGGTCGAAAGCTAGGTTCCGGACACCGGATTCTNGTGCAGGATNCTGNAACGGNGTTACCGGCAANGGTTAACGAACGAAGNAAGCGCGCGCGAAAGGGCNAATTCGAGTGTTGCCCAGGGAGATGGNCTTGAAACCTTGGCGNA] consensusID : consensus_1079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [GCNNCGCGTGTTCAACGCACTGTGCAGCGAGCAGGAGGCACGCGGCAAGGTGGTGCAGCAGGGTGGCGCCAAGGTGCTGCTCTCCGCTGTCGCTGAACGGCACGGCCAACGGGNAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCACCATCAATCCGNNGGTCGCGTNTCCCGGGCCAGACGCAATCTGGAGGTGATCCGGCCGCTAATGAACCAGCTCCATCCGGNACTACACGTCGCTGGNAAAACTTCNGAAGCACTGATGGCACTGTGCAATCTGGCCTCGNATGNAACGAATCCACCCGGCAGCGCATCCTGAA] [+] EMBL BX619817 [GCNNCGCGTGTTCAACGCACTGTGCAGCGAGCAGGAGGCACGCGGCAAGGTGGTGCAGCAGGGTGGCGCCAAGGTGCTGCTCTCCGCTGTCGCTGAACGGCACGGCCAACGGGNAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCACCATCAATCCGNNGGTCGCGTNTCCCGGGCCAGACGCAATCTGGAGGTGATCCGGCCGCTAATGAACCAGCTCCATCCGGNACTACACGTCGCTGGNAAAACTTCNGAAGCACTGATGGCACTGTGCAATCTGGCCTCGNATGNAACGAATCCACCCGGCAGCGCATCCTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1079#0 CAGGCCAGAATTCGGCACGNGTGACGCACTGTGTCAGCGAGCAGGAGCGCACGCGGCAAG 60 consensus_1079#1 ---------GCNNCGCGTGTTCAACGCACTGTG-CAGCGAGCAGGAG-GCACGCGGCAAG 49 ** * ********** ************* ************ consensus_1079#0 GTGGTGCAGCAGG-TGGCGCCAAGGGTGCTGCT-TCCGCTGTCGCTGAACGGCACGGCCA 118 consensus_1079#1 GTGGTGCAGCAGGGTGGCGCCAAGG-TGCTGCTCTCCGCTGTCGCTGAACGGCACGGCCA 108 ************* *********** ******* ************************** consensus_1079#0 ACGGTGAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCAGCCATCAATCCGGA 178 consensus_1079#1 ACGGGNAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCA-CCATCAATCCGNN 167 **** **************************************** *********** consensus_1079#0 GGTCGCGTT-CCCGGGCCAG-CGCAATCTGGAGGTGATCCGGCCTGCTAATGAACCAGCT 236 consensus_1079#1 GGTCGCGTNTCCCGGGCCAGACGCAATCTGGAGGTGATCCGGCC-GCTAATGAACCAGCT 226 ******** ********** *********************** *************** consensus_1079#0 CCATCCGGA-CTACACGTCGCTGGAAAA--CTTCGAAGCACGTGATGGCACTGTGCAATC 293 consensus_1079#1 CCATCCGGNACTACACGTCGCTGGNAAAACTTCNGAAGCAC-TGATGGCACTGTGCAATC 285 ******** ************** *** * ******* ****************** consensus_1079#0 TGGCCTCGAT--GAACGAATCCACCCGGCAGCGCATCCTGAAGGAGCAGGGCATGGTGAA 351 consensus_1079#1 TGGCCTCGNATGNAACGAATCCACCCGGCAGCGCATCCTGAA------------------ 327 ******** ***************************** consensus_1079#0 GTTCGAATCGTACATGGGCGAGGACCATATGATGCTGCGTCGAGCCGCCACCCAGGTGAT 411 consensus_1079#1 ------------------------------------------------------------ consensus_1079#0 GTGCAACATGGTCCAGTCGCCGGACGCGGTGAAGCTGTGCGAAAAGGAGAACGATCGGGT 471 consensus_1079#1 ------------------------------------------------------------ consensus_1079#0 AAAGATGCTGGCGCTGCTGTGCGAGGAAGAGGACGAGGATACGGCGCTGGCGGCATCGGG 531 consensus_1079#1 ------------------------------------------------------------ consensus_1079#0 TGCACTCGCCTATCTGACCTCCGTGTCGGAGCGGTGCTGCGAGAAGATGTTCGAACCGAT 591 consensus_1079#1 ------------------------------------------------------------ consensus_1079#0 CGCGTGGCTGGACGTGTTCCACACGTTGGTGGCGAAACCCGAGGCGCCGGTGTGCAGCAT 651 consensus_1079#1 ------------------------------------------------------------ consensus_1079#0 CGCGGCACGGTGATCATTCGCAACATCCATCAAGACGAACAAGCAGCTNGCGGTCGAAAG 711 consensus_1079#1 ------------------------------------------------------------ consensus_1079#0 CTAGGTTCCGGACACCGGATTCTNGTGCAGGATNCTGNAACGGNGTTACCGGCAANGGTT 771 consensus_1079#1 ------------------------------------------------------------ consensus_1079#0 AACGAACGAAGNAAGCGCGCGCGAAAGGGCNAATTCGAGTGTTGCCCAGGGAGATGGNCT 831 consensus_1079#1 ------------------------------------------------------------ consensus_1079#0 TGAAACCTTGGCGNA 846 consensus_1079#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||