These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACGCCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAAAAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCCTTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTTGTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAAAGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGAAATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACACACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCGGTACGCTGTTGCCGTTGATGCTGCTGCTCACAGGATGCAACCGGAAGTACCCACGAGAGAAGGTAGGAGAAAAAGAACCAATAGAGACAGAGAGGT] [+] EMBL BX611518 [AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACGCCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAAAAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCCTTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTTGTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAAAGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGAAATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACACACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCGGTACGCTGTTGCCGTTGATGCTGCTGCTCACAGGATGCAACCGGAAGTACCCACGAGAGAAGGTAGGAGAAAAAGAACCAATAGAGACAGAGAGGT] consensusID : consensus_108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CAGCGATTCCGCCGTCAGGAAGGACGCTTTCGGGGGCGATTTGCTGTGGGTCGGATTGCTGTGGGGCGGTGTGGTCGCGGCCGTGCAGGGCTGATCCGCAACGCTCTTCAGGATGTTGTCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGCCGTGTTGAGACGGCGGCCGTTCTCGAGCTCCTGACAGATGCGCGACACGCTGACGGAGTTCTCGGGCAGGTCGATCGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGCTGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTTCACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAGAATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCAGAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG] [-] EMBL BM628253 [CAGCGATTCCGCCGTCAGGAAGGACGCTTTCGGGGGCGATTTGCTGTGGGTCGGATTGCTGTGGGGCGGTGTGGTCGCGGCCGTGCAGGGCTGATCCGCAACGCTCTTCAGGATGTTGTCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGCCGTGTTGAGACGGCGGCCGTTCTCGAGCTCCTGACAGATGCGCGACACGCTGACGGAGTTCTCGGGCAGGTCGATCGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGCTGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTTCACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAGAATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCAGAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_108#0 AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACG 60 consensus_108#1 ------------------------------------------------------------ consensus_108#0 CCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAA 120 consensus_108#1 ------------------------------------------------------------ consensus_108#0 AAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCC 180 consensus_108#1 --------------------------------------------------CAGCGATTCC 10 ** * * *** consensus_108#0 TTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTT 240 consensus_108#1 GCCG-----TCAGGAAGGACGCT--TTCGGGGGCGATTTGCTGT---GGGTCGGATTGCT 60 * ** ***** * * ** * * * ** ** * * * consensus_108#0 GTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAA 300 consensus_108#1 GTGGGGCGGTGTGGTCGCGGCCGT-------GCAGGGCTGATCCGCAACGCTCTTCAGGA 113 ***** ** * ** *** * * * **** * consensus_108#0 AGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGA 360 consensus_108#1 TGTTG-TCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGC-CGTGTTGAGAC---- 167 ** * * * * ** * * * ** * * ** ** ** consensus_108#0 AATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACA 420 consensus_108#1 GGCGGCCGTTCTCGAG---CTCCTGACAGATGCGCG-ACACGCTGACGGA-GTTCTCGGG 222 * *** * * * ** * ** * * * **** * ** * * * consensus_108#0 CACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATC 480 consensus_108#1 CAGGTCGAT-CGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATC 281 ** * ** * ** * *********************************** consensus_108#0 GCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCT 540 consensus_108#1 GCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCT 341 ************************************************************ consensus_108#0 CGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCC---GGTACGC 597 consensus_108#1 CGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGC 401 ************************************************** ******* consensus_108#0 TGTTGCCGTTGATGCTGCTGCTCA-CAGGATGCAA-CCGGAAGTACCCACGAGAGAAGGT 655 consensus_108#1 TGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTT 461 **************** * * * * ** * ***** * * * consensus_108#0 AGGAGAA-----AAAGAACCAATAGAGACAGAGAGGT----------------------- 687 consensus_108#1 CACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAG 521 * * * * * *** * * **** * consensus_108#0 ------------------------------------------------------------ consensus_108#1 AATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCA 581 consensus_108#0 -------------------------------------------- consensus_108#1 GAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG 625 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||