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Anopheles gambiae
cluster # 108 cluster # 108       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_108#0 length = 687 sequences # 1  
consensus_108#1 length = 625 sequences # 1  

consensusID : consensus_108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence
                              [AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACGCCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAAAAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCCTTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTTGTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAAAGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGAAATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACACACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCGGTACGCTGTTGCCGTTGATGCTGCTGCTCACAGGATGCAACCGGAAGTACCCACGAGAGAAGGTAGGAGAAAAAGAACCAATAGAGACAGAGAGGT]

[+] EMBL BX611518             [AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACGCCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAAAAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCCTTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTTGTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAAAGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGAAATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACACACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCGGTACGCTGTTGCCGTTGATGCTGCTGCTCACAGGATGCAACCGGAAGTACCCACGAGAGAAGGTAGGAGAAAAAGAACCAATAGAGACAGAGAGGT]


>consensus_108#0 AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACG CCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAA AAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCC TTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTT GTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAA AGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGA AATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACA CACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATC GCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCT CGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCGGTACGCTGT TGCCGTTGATGCTGCTGCTCACAGGATGCAACCGGAAGTACCCACGAGAGAAGGTAGGAG AAAAAGAACCAATAGAGACAGAGAGGT



consensusID : consensus_108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [CAGCGATTCCGCCGTCAGGAAGGACGCTTTCGGGGGCGATTTGCTGTGGGTCGGATTGCTGTGGGGCGGTGTGGTCGCGGCCGTGCAGGGCTGATCCGCAACGCTCTTCAGGATGTTGTCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGCCGTGTTGAGACGGCGGCCGTTCTCGAGCTCCTGACAGATGCGCGACACGCTGACGGAGTTCTCGGGCAGGTCGATCGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGCTGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTTCACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAGAATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCAGAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG]

[-] EMBL BM628253             [CAGCGATTCCGCCGTCAGGAAGGACGCTTTCGGGGGCGATTTGCTGTGGGTCGGATTGCTGTGGGGCGGTGTGGTCGCGGCCGTGCAGGGCTGATCCGCAACGCTCTTCAGGATGTTGTCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGCCGTGTTGAGACGGCGGCCGTTCTCGAGCTCCTGACAGATGCGCGACACGCTGACGGAGTTCTCGGGCAGGTCGATCGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGCTGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTTCACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAGAATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCAGAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG]


>consensus_108#1 CAGCGATTCCGCCGTCAGGAAGGACGCTTTCGGGGGCGATTTGCTGTGGGTCGGATTGCT GTGGGGCGGTGTGGTCGCGGCCGTGCAGGGCTGATCCGCAACGCTCTTCAGGATGTTGTC CAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGCCGTGTTGAGACGGCGGCCGTTCTC GAGCTCCTGACAGATGCGCGACACGCTGACGGAGTTCTCGGGCAGGTCGATCGGGCGTGT GTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATCGCCGTATTTTGCTCACTCG CTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCTCGTCACGCTCGGTCGAAAG GTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGCTGTTGCCGTTGATGCTTTT CTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTTCACAAAGCTTTCACACTAT CAACACACACAGCAAACACGGGACAACATCAATCCAGGCAGAATTGCGTCTGCCGGATGA GTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCAGAGTTCCAGAGCCGACGAC GCACGACGTTGATCCAACGATCCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_108#0      AGCACCGCAAACCGGAAGCGAATCCTGTGCAGATGGTGCCAGAAAAATGCAACCGAAACG 60
consensus_108#1      ------------------------------------------------------------
                                                                                 

consensus_108#0      CCCGAAGTGTAGTGAGATATTCCCCAAATTCCAATGCACCAAAAGGAACGAGCTAATAAA 120
consensus_108#1      ------------------------------------------------------------
                                                                                 

consensus_108#0      AAGAGCAAAACCCGCATATATGCAAAACAAAAACGAGCGATCGATGAAATCACCAACTCC 180
consensus_108#1      --------------------------------------------------CAGCGATTCC 10
                                                                       ** * * ***

consensus_108#0      TTCTGGGGCTCGGGAAGCGTGGTGAGTCAAAACTGTCTCGTTGCTCCGGATTCCGGTTTT 240
consensus_108#1      GCCG-----TCAGGAAGGACGCT--TTCGGGGGCGATTTGCTGT---GGGTCGGATTGCT 60
                       *      ** *****   * *   **      *  * * **    ** *     *  *

consensus_108#0      GTGGGATCGTTCTCCTTCCCCCCCAAAAAAAGCAAACTAAAACTAAATTACTCTCACCAA 300
consensus_108#1      GTGGGGCGGTGTGGTCGCGGCCGT-------GCAGGGCTGATCCGCAACGCTCTTCAGGA 113
                     *****   **       *  **         ***      * *   *   ****     *

consensus_108#0      AGTAGGTACGAAATAGGGTTATTAATAAGAGCAATTCCCAAGACACGCGTCAGTACCAGA 360
consensus_108#1      TGTTG-TCCAGCGCCACAAAGTCGATGTGGTTGTTGCGCATGGC-CGTGTTGAGAC---- 167
                      ** * * *            *  **  *     * * ** * * ** **    **    

consensus_108#0      AATGATCGTACCAGCGTACCTTCCCCCACACACACACACACACACACACACACACACACA 420
consensus_108#1      GGCGGCCGTTCTCGAG---CTCCTGACAGATGCGCG-ACACGCTGACGGA-GTTCTCGGG 222
                        *  *** *  * *   ** *   ** *  * *  **** *  **  *    * *   

consensus_108#0      CACATTGACGCTCGCTTCCAACTTACCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATC 480
consensus_108#1      CAGGTCGAT-CGGGCGTGTGTTGGTCCTCGGGGTGGTTTTCCTTGGGAACTGTAATGATC 281
                     **  * **  *  ** *        ***********************************

consensus_108#0      GCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCT 540
consensus_108#1      GCCGTATTTTGCTCACTCGCTTCCACTGCGTGGGTTCGACGTCGTCATCGAAGTTGCTCT 341
                     ************************************************************

consensus_108#0      CGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCC---GGTACGC 597
consensus_108#1      CGTCACGCTCGGTCGAAAGGTCCTCGATCGAGATGCTCTTGCCGCGGGCCAGCGGTACGC 401
                     **************************************************   *******

consensus_108#0      TGTTGCCGTTGATGCTGCTGCTCA-CAGGATGCAA-CCGGAAGTACCCACGAGAGAAGGT 655
consensus_108#1      TGTTGCCGTTGATGCTTTTCTTTGGCTGAATACCTTCCGGATGCGTTTGGTTTCGCTTTT 461
                     ****************  *  *   * * ** *   ***** *           *    *

consensus_108#0      AGGAGAA-----AAAGAACCAATAGAGACAGAGAGGT----------------------- 687
consensus_108#1      CACAAAGCTTTCACACTATCAACACACACAGCAAACACGGGACAACATCAATCCAGGCAG 521
                        * *      * *  * *** * * ****  *                          

consensus_108#0      ------------------------------------------------------------
consensus_108#1      AATTGCGTCTGCCGGATGAGTTTAATGAGTTTAGTTAGGGAATGGAAACACCAATTCTCA 581
                                                                                 

consensus_108#0      --------------------------------------------
consensus_108#1      GAGTTCCAGAGCCGACGACGCACGACGTTGATCCAACGATCCGG 625
                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)