These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTGAAAAGGGCTAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACCCGCTTGCAGGACAGGAAACGGAATTTCAGTTCCCAGGATTCAGTTCCCAGGAGTGTTTGTAAACTGAATGATAATAAGGAAGCCAGAACACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATACAAGTCGTGACAAGCCGTATCAAAGCTGCAGAGGCGTCGAGCATTGGGCAAATGCTCCATGGTAAAATTTGTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTTACCTTTTTTCCCCCTATAGTACTTTCCATAGACACACTTACTTTCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCTGATAGTGTAAAGGAAG] [+] EMBL BM652297 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTGAAAAGGGCTAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACCCGCTTGCAGGACAGGAAACGGAATTTCAGTTCCCAGGATTCAGTTCCCAGGAGTGTTTGTAAACTGAATGATAATAAGGAAGCCAGAACACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATACAAGTCGTGACAAGCCGTATCAAAGCTGCAGAGGCGTCGAGCATTGGGCAAATGCTCCATGGTAAAATTTGTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTTACCTTTTTTCCCCCTATAGTACTTTCCATAGACACACTTACTTTCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCTGATAGTGTAAAGGAAG] consensusID : consensus_1098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCGGATCTGTATAAATTGAAAAGGGCAAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACACGCTTGCAGGACAGGAAACGGAATTTGTGCAAGAAGGATTCAGTTCCCAGGAGTGTTTGGTTGTAAACTGAATGATAATAAGGAAGCCAGAAAACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATACAAGTCGTGACAAGCCGTAACAGAGCTGCAGAGGCGTCAAGCATTGGACAAAATGCTCCACTGTAAATTTTTTTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTTATCTTTTTCCCCCTATAGTACTTTCCATAGACACACTTCCTTTCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCAGATAGTGTAAAGGAAGAAATGAGAAATTAAGGGGGGTGCGGGGAGTAAAAAAAACTAGCCGT] [+] EMBL BM586364 [CCGGATCTGTATAAATTGAAAAGGGCAAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACACGCTTGCAGGACAGGAAACGGAATTTGTGCAAGAAGGATTCAGTTCCCAGGAGTGTTTGGTTGTAAACTGAATGATAATAAGGAAGCCAGAAAACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATACAAGTCGTGACAAGCCGTAACAGAGCTGCAGAGGCGTCAAGCATTGGACAAAATGCTCCACTGTAAATTTTTTTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTTATCTTTTTCCCCCTATAGTACTTTCCATAGACACACTTCCTTTCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCAGATAGTGTAAAGGAAGAAATGAGAAATTAAGGGGGGTGCGGGGAGTAAAAAAAACTAGCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1098#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT 60 consensus_1098#1 ------------------------------------------------CCGGATCTGTAT 12 *** * * consensus_1098#0 CCGTTGAAAAGGGCTAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGC 120 consensus_1098#1 AAATTGAAAAGGGCAAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGC 72 *********** ********************************************* consensus_1098#0 AAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACCCGCTTGCAG 180 consensus_1098#1 AAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACACGCTTGCAG 132 ************************************************** ********* consensus_1098#0 GACAGGAAACGGAATTTCAGTTCCCAGGATTCAGTTCCCAGGAGTGTTTG----TAAACT 236 consensus_1098#1 GACAGGAAACGGAATTTGTGCAAGAAGGATTCAGTTCCCAGGAGTGTTTGGTTGTAAACT 192 ***************** * ************************* ****** consensus_1098#0 GAATGATAATAAGGAAGCCAGAACACACAAAGAAATAAAGCGGAAATCATGGATAAAACA 296 consensus_1098#1 GAATGATAATAAGGAAGCCAGAAAACACAAAGAAATAAAGCGGAAATCATGGATAAAACA 252 *********************** ************************************ consensus_1098#0 AATACAAGTCGTGACAAGCCGTATCAAAGCTGCAGAGGCGTCGAGCATTGGGCAAA-TGC 355 consensus_1098#1 AATACAAGTCGTGACAAGCCGTAACAGAGCTGCAGAGGCGTCAAGCATTGGACAAAATGC 312 *********************** ** *************** ******** **** *** consensus_1098#0 TCCATGGTAAAATTTGTTTTTTTTTT-GTTTATGATAGTTACACAACATCAGGCTTTTTT 414 consensus_1098#1 TCCACTGTAAATTTTTTTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTT 372 **** ***** *** ********** ********************************* consensus_1098#0 TAATTTACCTTTTTTCCCCCTATAGTACTTTCCATAGACACACTTACTTTCCATAGACAG 474 consensus_1098#1 TAATTTATCTTTTT-CCCCCTATAGTACTTTCCATAGACACACTTCCTTTCCATAGACAG 431 ******* ****** ****************************** ************** consensus_1098#0 TTCAGGTGTGTCCGTCTCTGTGTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAA 534 consensus_1098#1 TTCAGGTGTGTCCGTCTCTGTGTGTGTG----TTTGTGTGTTTCCATAAGGCAAAGTGAA 487 **************************** **************************** consensus_1098#0 GTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCTGATAGTGTA 594 consensus_1098#1 GTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCAGATAGTGTA 547 ************************************************** ********* consensus_1098#0 AAGGAAG---------------------------------------------- 601 consensus_1098#1 AAGGAAGAAATGAGAAATTAAGGGGGGTGCGGGGAGTAAAAAAAACTAGCCGT 600 ******* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||