cluster # 1169

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Anopheles gambiae
cluster # 1169 cluster # 1169 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1169#0 length = 685 sequences # 1

consensus_1169#1 length = 595 sequences # 1

consensusID : consensus_1169#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCTGCGCAGCGCTACGCTCACACAGTGCGGCTAGAAAGCATCGAGAAGTGCAAAGCCGTAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGACGAACAAGAAGCAGAACAAGTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTACTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGCAGACGTACGATACTTCAAAAACGTACTACCAGCAGGCGGCCGGGGCAACGGCCGGCTACTCGACCCCGACCGGATACGACGCGGGCGGCACTGCGCCAAAGGTTATCGCCGGGTTTCAGCCGGGGCAGGCGACTGCTTACGCACCGCACCCCGCCCGGGGCTCGCTGCCACCGGCAAAGGCAGGTCAGCAGTACCAGCA]

[+] EMBL BM629067             [CCGCTGCGCAGCGCTACGCTCACACAGTGCGGCTAGAAAGCATCGAGAAGTGCAAAGCCGTAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGACGAACAAGAAGCAGAACAAGTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTACTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGCAGACGTACGATACTTCAAAAACGTACTACCAGCAGGCGGCCGGGGCAACGGCCGGCTACTCGACCCCGACCGGATACGACGCGGGCGGCACTGCGCCAAAGGTTATCGCCGGGTTTCAGCCGGGGCAGGCGACTGCTTACGCACCGCACCCCGCCCGGGGCTCGCTGCCACCGGCAAAGGCAGGTCAGCAGTACCAGCA]




>consensus_1169#0
CCGCTGCGCAGCGCTACGCTCACACAGTGCGGCTAGAAAGCATCGAGAAGTGCAAAGCCG
TAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAA
AAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGACGAACAAGAAGCAGAACAA
GTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGG
CCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTG
GGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTG
CACCTACTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGA
CACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTA
CGACGCAGACGTACGATACTTCAAAAACGTACTACCAGCAGGCGGCCGGGGCAACGGCCG
GCTACTCGACCCCGACCGGATACGACGCGGGCGGCACTGCGCCAAAGGTTATCGCCGGGT
TTCAGCCGGGGCAGGCGACTGCTTACGCACCGCACCCCGCCCGGGGCTCGCTGCCACCGG
CAAAGGCAGGTCAGCAGTACCAGCA

consensusID : consensus_1169#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CCGCCCACGCGTCCGGAAAGCATCGAGAAGGTTTGAAACAAAATAGTTTGGAATATCGAACTTACGGGCAAAAAGTCGCTAGCTTGCATGGCCCAGCTGTAACCGATCTAACTGGCGTGCTTGGCGGTCACCACATTTCACATCCATATTCCGGTGCAGTGTAAAGCCGTAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGAGGAACAAGAAGCAGAACAAGTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTTCTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGC]

[+] EMBL BM586295             [CCGCCCACGCGTCCGGAAAGCATCGAGAAGGTTTGAAACAAAATAGTTTGGAATATCGAACTTACGGGCAAAAAGTCGCTAGCTTGCATGGCCCAGCTGTAACCGATCTAACTGGCGTGCTTGGCGGTCACCACATTTCACATCCATATTCCGGTGCAGTGTAAAGCCGTAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGAGGAACAAGAAGCAGAACAAGTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTTCTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGC]




>consensus_1169#1
CCGCCCACGCGTCCGGAAAGCATCGAGAAGGTTTGAAACAAAATAGTTTGGAATATCGAA
CTTACGGGCAAAAAGTCGCTAGCTTGCATGGCCCAGCTGTAACCGATCTAACTGGCGTGC
TTGGCGGTCACCACATTTCACATCCATATTCCGGTGCAGTGTAAAGCCGTAGAGAAACAG
CGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCC
AAGCCAAGACGAAGAAGTGGAAGACGTCGAGGAACAAGAAGCAGAACAAGTAGCGAGCAA
TCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAAT
TACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTAT
CCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTTCTTAC
GGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACA
TACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1169#0      ------------------------------------------------------------
consensus_1169#1      CCGCCCACGCGTCCGGAAAGCATCGAGAAGGTTTGAAACAAAATAGTTTGGAATATCGAA 60
                                                                                  

consensus_1169#0      ------------------------------------------------CCGCTGCGCAGC 12
consensus_1169#1      CTTACGGGCAAAAAGTCGCTAGCTTGCATGGCCCAGCTGTAACCGATCTAACTGGCGTGC 120
                                                                         ***    **

consensus_1169#0      GCTACGCTCAC-ACAGTGCGGCTAGAAAGCATCGAGAAGTGCAAAGCCGTAGAGAAACAG 71
consensus_1169#1      TTGGCGGTCACCACATTTCACATCCATATTCCGGTGCAGTGTAAAGCCGTAGAGAAACAG 180
                          ** **** *** * *   *  * *     * * **** ******************

consensus_1169#0      CGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCC 131
consensus_1169#1      CGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCC 240
                      ************************************************************

consensus_1169#0      AAGCCAAGACGAAGAAGTGGAAGACGTCGACGAACAAGAAGCAGAACAAGTAGCGAGCAA 191
consensus_1169#1      AAGCCAAGACGAAGAAGTGGAAGACGTCGAGGAACAAGAAGCAGAACAAGTAGCGAGCAA 300
                      ****************************** *****************************

consensus_1169#0      TCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAAT 251
consensus_1169#1      TCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAAT 360
                      ************************************************************

consensus_1169#0      TACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTAT 311
consensus_1169#1      TACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTAT 420
                      ************************************************************

consensus_1169#0      CCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTACTTAC 371
consensus_1169#1      CCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTTCTTAC 480
                      ****************************************************** *****

consensus_1169#0      GGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACA 431
consensus_1169#1      GGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACA 540
                      ************************************************************

consensus_1169#0      TACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGCAGACG 491
consensus_1169#1      TACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGC----- 595
                      *******************************************************     

consensus_1169#0      TACGATACTTCAAAAACGTACTACCAGCAGGCGGCCGGGGCAACGGCCGGCTACTCGACC 551
consensus_1169#1      ------------------------------------------------------------
                                                                                  

consensus_1169#0      CCGACCGGATACGACGCGGGCGGCACTGCGCCAAAGGTTATCGCCGGGTTTCAGCCGGGG 611
consensus_1169#1      ------------------------------------------------------------
                                                                                  

consensus_1169#0      CAGGCGACTGCTTACGCACCGCACCCCGCCCGGGGCTCGCTGCCACCGGCAAAGGCAGGT 671
consensus_1169#1      ------------------------------------------------------------
                                                                                  

consensus_1169#0      CAGCAGTACCAGCA 685
consensus_1169#1      --------------