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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1174 cluster # 1174       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1174#0 length = 461 sequences # 1  
consensus_1174#1 length = 204 sequences # 1  

consensusID : consensus_1174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence
                              [AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCGATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGATTGAAGGTAAAATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCATCGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACTTTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAGCAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT]

[+] EMBL BX468546             [AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCGATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGATTGAAGGTAAAATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCATCGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACTTTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAGCAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT]


>consensus_1174#0 AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCG ATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGA TTGAAGGTAAAATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATGA CGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCG CGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCATC GATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACTT TCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAGC AACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT



consensusID : consensus_1174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence
                              [CAGATCGCACGAGGTGTACTGCAAAAGATTGAAGGTAAACATCGACAACAAAGTGTATCAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAACACTTCCGCGAGCATCTC]

[+] EMBL BX469331             [CAGATCGCACGAGGTGTACTGCAAAAGATTGAAGGTAAACATCGACAACAAAGTGTATCAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAACACTTCCGCGAGCATCTC]


>consensus_1174#1 CAGATCGCACGAGGTGTACTGCAAAAGATTGAAGGTAAACATCGACAACAAAGTGTATCA ACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACGACAAC CCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAG ATCAAACACTTCCGCGAGCATCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1174#0      AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCG 60
consensus_1174#1      ------------------------------------------------------------
                                                                                  

consensus_1174#0      ATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGA 120
consensus_1174#1      --------------------------------CAGATCGCACGAGGTGTACTGCAAAAGA 28
                                                         *  * **     *  **********

consensus_1174#0      TTGAAGGTAAA-ATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATG 179
consensus_1174#1      TTGAAGGTAAACATCGACAACAAAGTGTATCAA-CGCTGTCCGAGTTTATCGGCGACATG 87
                      *********** ********************* **************************

consensus_1174#0      ACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGC 239
consensus_1174#1      ACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGC 147
                      *************************** ********************************

consensus_1174#0      GCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCAT 299
consensus_1174#1      GCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAA-CACTTCCGCGAGCATCTC-- 204
                      *************************************** ******************  

consensus_1174#0      CGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACT 359
consensus_1174#1      ------------------------------------------------------------
                                                                                  

consensus_1174#0      TTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAG 419
consensus_1174#1      ------------------------------------------------------------
                                                                                  

consensus_1174#0      CAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT 461
consensus_1174#1      ------------------------------------------
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)